Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060351.seq
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    30   1.4  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    29   2.5  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   4.3  
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            28   5.7  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    28   5.7  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    28   5.7  
At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR...    27   7.6  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.6  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    27   7.6  

>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 324 LHQLRTAMHHHPPNQERAVNLSILRCPGLVRFPVLS-QIKPQAPLL 190
           L QL T  HHHP +     NL +LR P L   P L  QI   + LL
Sbjct: 191 LLQLYTTPHHHPRSTTN-TNLLLLRTPLLTSTPTLPLQITTSSSLL 235


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 328 IAPPTKNGH--APPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFS 155
           ++PP+ N    APPP +++ +  S  PPV+ P    +      + S P   + S P S S
Sbjct: 10  LSPPSSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPPSSS 69


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -3

Query: 322 PPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATI 143
           PPT    +PPP+ S     S +PP S P     +  +    S PG   P +P     A I
Sbjct: 35  PPTTTPSSPPPSPSTN---STSPPPSSP-----LPPSLPPPSPPGSLTPPLPQPSPSAPI 86

Query: 142 LP 137
            P
Sbjct: 87  TP 88


>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 327 SLHQLRTAMHHHPPNQERAVNLSILRCPG 241
           S HQ RT  HHHP N    V  S  R  G
Sbjct: 19  SRHQRRTKSHHHPLNPPNPVAESRKRSKG 47


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -3

Query: 325 APPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFAT 146
           +P T    APPPT +     +  PP +    +S  +   +  + P    P+ P +   A 
Sbjct: 30  SPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAP 89

Query: 145 ILPP 134
           ++ P
Sbjct: 90  VISP 93


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 155 LCNHTPPGVQNLWFPGSCPP 96
           +C   PP  + LWFPGS PP
Sbjct: 57  VCEPLPPD-RPLWFPGSSPP 75


>At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1041

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 291 PPNQERAVNLSILRCPGLVRFP-VLSQIKP 205
           P N E    L +LRCP L  FP  + QI P
Sbjct: 650 PLNSESLEYLDLLRCPKLRNFPETIMQISP 679


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 4   RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 114
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -3

Query: 322 PPTKNGHAPPPTESRKSC*SVNPPVSGPGEISRVESN*AAGSTPGGALPSI 170
           PP K G  PPP           PP +  G     E++ A G T     P +
Sbjct: 413 PPGKKGAGPPPPPPMSKKGPPKPPGNPKGPTKSGETSLAVGKTEDPTQPKL 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,066
Number of Sequences: 28952
Number of extensions: 302451
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)