Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060350.seq
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      30   1.1  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   3.3  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   4.4  
AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 TCVSQNTGTCPESSCACPETSCACPETSCACP 240
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 TCVSQNTGTCPESSCACPETSCACPETSCACP 240
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 TCVSQNTGTCPESSCACPETSCACPETSCACP 240
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 145 TCVSQNTGTCPESSCACPETSCACPETSCACP 240
           TC     G   E SC C + SC+     C CP
Sbjct: 589 TCSKGKYGESCELSCPCSDASCSKQTGKCLCP 620


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 184 SCACPETSCACPETSCACPES 246
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 184 SCACPETSCACPETSCACPES 246
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = +1

Query: 145  TCVSQNTGTCPESSCACPETSCA----CPETSCACPES 246
            TCVS NT + P   C    T C     C +  C CP +
Sbjct: 1475 TCVSINTYSSPGDPCDLTNTICTGNSQCIDGICKCPNN 1512


>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 VSQNTGTCPESSCACPETSCAC 216
           +S  TG+  E+ CAC   +CAC
Sbjct: 126 LSLRTGSSNENGCACVHGNCAC 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,773,653
Number of Sequences: 27780
Number of extensions: 63508
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)