Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060350.seq
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32190.1 68414.m03959 expressed protein                             30   1.0  
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    28   5.4  
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    27   7.2  

>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 163 TGTCPESSCACPETSCACPETSCAC 237
           +G C   SC+CP+  C  P  SC C
Sbjct: 298 SGLC-RPSCSCPKPRCPKPSCSCGC 321



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 169 TCPESSCACPETSCACPETSCAC 237
           +CP+  C  P  SC C    C C
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGC 328


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 148 CVSQNTGTCPESSCACPETSCACPETSCACPES 246
           C     GTC E  C CP+ SC      C C +S
Sbjct: 665 CPCLLNGTCCEKYCGCPK-SCKNRFRGCHCAKS 696


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 148 CVSQNTGTCPESSCACPETSCACPETSCACPES 246
           C+ +  G C    C   E++  C + S  CP+S
Sbjct: 377 CLYEYNGKCYSWGCCPYESATCCDDGSSCCPQS 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,591,554
Number of Sequences: 28952
Number of extensions: 56316
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)