Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060349.seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 122 2e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 118 4e-27
08_02_0657 - 19749835-19751942,19753123-19753561 96 3e-20
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 31 0.87
02_01_0462 + 3332464-3332470,3333606-3335806 31 0.87
06_01_0057 - 483710-484309 29 3.5
05_01_0453 - 3592555-3592897,3592997-3593067,3593372-3593465,359... 29 3.5
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 122 bits (295), Expect = 2e-28
Identities = 53/91 (58%), Positives = 67/91 (73%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ K+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRK 155
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/45 (77%), Positives = 41/45 (91%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEE 644
D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+E
Sbjct: 157 DLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDE 201
Score = 81.4 bits (192), Expect = 6e-16
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
+D K D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKK 70
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 118 bits (284), Expect = 4e-27
Identities = 51/91 (56%), Positives = 66/91 (72%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ K+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ +
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRK 155
Score = 85.0 bits (201), Expect = 5e-17
Identities = 42/60 (70%), Positives = 47/60 (78%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
AD K D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKK 70
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/45 (77%), Positives = 41/45 (91%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEE 644
D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+E
Sbjct: 157 DLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDE 201
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 95.9 bits (228), Expect = 3e-20
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +1
Query: 241 QGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 420
+G+ +E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 421 DDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
DDSVEG++G+LFE YLKPYFM+A RP+ +
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRPVKK 158
Score = 57.6 bits (133), Expect = 9e-09
Identities = 32/61 (52%), Positives = 43/61 (70%), Gaps = 5/61 (8%)
Frame = +2
Query: 95 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRPR 259
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+R R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 260 K 262
+
Sbjct: 76 E 76
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/47 (59%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEE 644
D F+VRG M AVEFKV++T+P+ IVA DT I CD G+P+KRE+E
Sbjct: 160 DRFLVRGHMHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDE 206
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 31.1 bits (67), Expect = 0.87
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 410 YCQLMIQLRVLLAIYSKYT*-SRTSWRLTVRSIVRHLHGPRGHARRRVQSGRNRSITILH 586
+C+ IQ+ A + ++ S L S HLHG G RR + +GR R+I +L
Sbjct: 1228 FCEKKIQIPPESACFIEFPDESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLG 1287
Query: 587 RG 592
G
Sbjct: 1288 HG 1289
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 146 VEEAVSDDNSVVAL---SQAKMEQLQLFRGDTVLLKGKRPRKPFASCSQTII 292
+EE V N +V S A+M+QL F D + G P + F++C+Q +I
Sbjct: 252 LEELVLSSNRLVGSLPPSFARMQQLSFFAIDNNYINGSIPLEMFSNCTQLMI 303
>06_01_0057 - 483710-484309
Length = 199
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 99 YRPRSSVARTDPTVSLSKKQSAMTTQS-WHFHRPKWSNFNSSVVTQSCSR 245
Y P ART P ++ + A S W F WS+ S V+T+ SR
Sbjct: 62 YFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSR 111
>05_01_0453 -
3592555-3592897,3592997-3593067,3593372-3593465,
3593547-3593614,3593694-3593760,3593924-3594054,
3594145-3594252,3594671-3594757,3594991-3595056,
3595564-3595630,3596116-3596192,3596358-3596417,
3597363-3597480,3597833-3597906,3598216-3598312,
3599328-3599380,3599535-3599630,3599768-3599965,
3600556-3600722,3600813-3600882,3601428-3601448,
3602851-3602982
Length = 754
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 146 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRPRKPFAS 274
V A S +N +V + L + + +T LL+G PR FAS
Sbjct: 79 VGHAASHNNGLVDTKRDTARALAVSKSETALLRGPPPRSGFAS 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,267,515
Number of Sequences: 37544
Number of extensions: 407320
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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