Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060349.seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        100   1e-21
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        29   2.7  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        29   2.7  
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        29   3.6  
SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)                 28   6.3  
SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  100 bits (239), Expect = 1e-21
 Identities = 42/50 (84%), Positives = 48/50 (96%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEE E+LN
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLN 153



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 42/54 (77%), Positives = 51/54 (94%)
 Frame = +2

Query: 92  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKK 58



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 363
           L +G+  K+TVCIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 590 HDAKW*WICFDHFELDGAHAPADHEGVA 507
           H   W  IC+DH++L  AH      G+A
Sbjct: 255 HAGAWGLICYDHWDLHDAHVACRQVGLA 282


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 590 HDAKW*WICFDHFELDGAHAPADHEGVA 507
           H   W  IC+DH++L  AH      G+A
Sbjct: 318 HAGAWGLICYDHWDLHDAHVACRQVGLA 345


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 590 HDAKW*WICFDHFELDGAHAPADHEGVARWIGR*ASMKYGFKYTSNRL 447
           ++ +W  +C DH+ L  AH      G  R +      KYG    SNR+
Sbjct: 271 YNGQWGGVCDDHWTLSNAHVVCRELGFERGLSVACCSKYGTS-LSNRI 317


>SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)
          Length = 512

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 436 GLTGNLFEVYLKPYFMEAYRPIHRATPSWSAGACAPSSSKWSKQIH 573
           G+T N F +   PYFM   + + +    W+   C     K   +IH
Sbjct: 241 GMTENFFILLENPYFMSVPKVLTKNVFGWAFSKCLYWDPKCQTRIH 286


>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 554  FELDGAHAPADHEGVARW 501
            F+ DGAHAP D + +  W
Sbjct: 1328 FKFDGAHAPGDEDAMPPW 1345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,992,842
Number of Sequences: 59808
Number of extensions: 465491
Number of successful extensions: 1254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)