Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060349.seq
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 134 3e-31
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 134 3e-31
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 134 3e-31
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 134 3e-31
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 134 3e-31
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 131 3e-30
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 77 6e-14
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 134 bits (324), Expect = 3e-31
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ +E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI +
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRK 148
Score = 97.1 bits (231), Expect = 5e-20
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
D F+VRGGMRAVEFKVVET PSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 150 DIFLVRGGMRAVEFKVVETHPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199
Score = 96.3 bits (229), Expect = 9e-20
Identities = 46/63 (73%), Positives = 59/63 (93%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 254 PRK 262
R+
Sbjct: 64 RRE 66
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 134 bits (324), Expect = 3e-31
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ +E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI +
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRK 148
Score = 99 bits (238), Expect = 7e-21
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 150 DIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199
Score = 96.3 bits (229), Expect = 9e-20
Identities = 46/63 (73%), Positives = 59/63 (93%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 254 PRK 262
R+
Sbjct: 64 RRE 66
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 134 bits (324), Expect = 3e-31
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ +E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI +
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRK 148
Score = 99 bits (238), Expect = 7e-21
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 150 DIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199
Score = 96.3 bits (229), Expect = 9e-20
Identities = 46/63 (73%), Positives = 59/63 (93%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 254 PRK 262
R+
Sbjct: 64 RRE 66
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 134 bits (324), Expect = 3e-31
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ +E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI +
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRK 148
Score = 99 bits (238), Expect = 7e-21
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 150 DIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199
Score = 96.3 bits (229), Expect = 9e-20
Identities = 46/63 (73%), Positives = 59/63 (93%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 254 PRK 262
R+
Sbjct: 64 RRE 66
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 134 bits (324), Expect = 3e-31
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = +1
Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
L +G+ +E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
PIDD+VEG+TGNLFEVYLKPYF+EAYRPI +
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRK 148
Score = 99 bits (238), Expect = 7e-21
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 150 DIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 199
Score = 96.3 bits (229), Expect = 9e-20
Identities = 46/63 (73%), Positives = 59/63 (93%)
Frame = +2
Query: 74 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
AD+K DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5 ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63
Query: 254 PRK 262
R+
Sbjct: 64 RRE 66
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 131 bits (316), Expect = 3e-30
Identities = 57/84 (67%), Positives = 65/84 (77%)
Frame = +1
Query: 256 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 435
+E VCIVLSDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62
Query: 436 GLTGNLFEVYLKPYFMEAYRPIHR 507
G+TGNLFEVYLKPYF+EAYRPI +
Sbjct: 63 GITGNLFEVYLKPYFLEAYRPIRK 86
Score = 99 bits (238), Expect = 7e-21
Identities = 43/50 (86%), Positives = 48/50 (96%)
Frame = +3
Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 88 DIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 137
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 77.0 bits (181), Expect = 6e-14
Identities = 32/37 (86%), Positives = 36/37 (97%)
Frame = +3
Query: 549 FKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
FKVVETDPSP+CIVAPDTVIHC+GEPIKRE+E E+LN
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLN 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,104,055
Number of Sequences: 237096
Number of extensions: 2099019
Number of successful extensions: 4652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4652
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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