Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060349.seq
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   121   4e-28
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   109   1e-24
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   109   1e-24
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.3  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  121 bits (292), Expect = 4e-28
 Identities = 49/91 (53%), Positives = 70/91 (76%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
           + +G+  KE+V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+L
Sbjct: 64  ILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVL 123

Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
           PIDD++EGLTGNLF+V+LKPYF+EAYRP+H+
Sbjct: 124 PIDDTIEGLTGNLFDVFLKPYFLEAYRPLHK 154



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 38/63 (60%), Positives = 52/63 (82%)
 Frame = +2

Query: 83  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRPRK 262
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+ ++
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 263 PFA 271
             A
Sbjct: 73  SVA 75



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 33/50 (66%), Positives = 42/50 (84%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
           D F V+  MR VEFKVVET+P+P CIV+PDT+IH +G+PIKREEE E++N
Sbjct: 156 DIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEGDPIKREEEEESMN 205


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  109 bits (263), Expect = 1e-24
 Identities = 48/91 (52%), Positives = 68/91 (74%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
           + +G+  +ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHK 153



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/50 (76%), Positives = 42/50 (84%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
           D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEE EALN
Sbjct: 155 DIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALN 204



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 37/60 (61%), Positives = 52/60 (86%)
 Frame = +2

Query: 83  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRPRK 262
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+ R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  109 bits (263), Expect = 1e-24
 Identities = 48/91 (52%), Positives = 68/91 (74%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
           + +G+  +ETV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+L
Sbjct: 64  ILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVL 122

Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
           PIDD++EGLTGNLF+V+L+PYF +AYRP+H+
Sbjct: 123 PIDDTIEGLTGNLFDVFLRPYFTDAYRPVHK 153



 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/50 (76%), Positives = 42/50 (84%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALN 659
           D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G+PIKREEE EALN
Sbjct: 155 DIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEGDPIKREEEEEALN 204



 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 37/60 (61%), Positives = 52/60 (86%)
 Frame = +2

Query: 83  KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRPRK 262
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+ R+
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
          protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 97 IIRAFIICHFIQNLLLESKNYYNFY 23
          ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8  LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 62  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 211
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 62  LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 211
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,408
Number of Sequences: 27780
Number of extensions: 336007
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)