Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060349.seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   120   7e-28
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   120   7e-28
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   115   3e-26
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.96 
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At5g17580.1 68418.m02062 phototropic-responsive NPH3 family prot...    28   6.8  
At5g10520.1 68418.m01218 protein kinase family protein contains ...    27   9.0  
At5g05980.1 68418.m00662 dihydrofolate synthetase/folylpolygluta...    27   9.0  
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    27   9.0  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  120 bits (290), Expect = 7e-28
 Identities = 51/91 (56%), Positives = 66/91 (72%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
           L +G+  K+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRK 152



 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/60 (63%), Positives = 50/60 (83%)
 Frame = +2

Query: 74  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
           +D+K+  D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 32/45 (71%), Positives = 41/45 (91%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEE 644
           D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+E
Sbjct: 154 DLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDE 198


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  120 bits (290), Expect = 7e-28
 Identities = 51/91 (56%), Positives = 66/91 (72%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
           L +G+  K+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+ +
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRK 152



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 40/60 (66%), Positives = 51/60 (85%)
 Frame = +2

Query: 74  ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 253
           +D+KS  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KGK+
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 33/52 (63%), Positives = 43/52 (82%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEXEALNAG 665
           D F+VRGGMR+VEFKV+ETDP+ +C+VAPDT I C+GEP+KRE+E    + G
Sbjct: 154 DLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVG 205


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  115 bits (277), Expect = 3e-26
 Identities = 47/91 (51%), Positives = 65/91 (71%)
 Frame = +1

Query: 235 LAQGQTPKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 414
           L +G+  K+TVCI L+D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 415 PIDDSVEGLTGNLFEVYLKPYFMEAYRPIHR 507
           P+DD++EG++GN+F+ YLKPYF+EAYRP+ +
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRK 153



 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 32/45 (71%), Positives = 41/45 (91%)
 Frame = +3

Query: 510 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEE 644
           D F+VRGGMR++EFKV+ETDP+ +C+VAPDT I C+GEPIKRE+E
Sbjct: 155 DLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDE 199



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
 Frame = +2

Query: 74  ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 250
           +D+K +  D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KGK
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67

Query: 251 R 253
           +
Sbjct: 68  K 68


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 226 TTEELKLLHFGL*KCHD*VVIAD 158
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 381 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 286
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At5g17580.1 68418.m02062 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 548

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 499 IHRATPSWSAGACAPSSSKWSKQIHHHF 582
           ++ ++ S+S  AC     K  K+IHHH+
Sbjct: 520 LNSSSSSYSVDACTCDVKKKKKKIHHHY 547


>At5g10520.1 68418.m01218 protein kinase family protein contains
           protein kinase domain, INTERPRO:IPR000719
          Length = 467

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 69  KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 212
           ++ +I  L  Y   R ++ R  P   L+  +SA T +++   +P W NF
Sbjct: 95  RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141


>At5g05980.1 68418.m00662 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS2)
           nearly identical to gi:17976705; identical to cDNA
           dihydrofolate synthetase/folylpolyglutamate synthetase
           (dhfs/fpgs2 gene) GI:17976704
          Length = 571

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 554 FELDGAHAPADHEGVARW 501
           F LDGAH+P   E  A+W
Sbjct: 382 FYLDGAHSPESMEACAKW 399


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +3

Query: 48  SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 179
           S NK  I  +IIK   IY P+++ A    + S S   SA TT S
Sbjct: 64  SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,225,307
Number of Sequences: 28952
Number of extensions: 316118
Number of successful extensions: 886
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)