Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060348.seq
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a... 28 1.4
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 4.3
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 26 5.7
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 7.6
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 25 7.6
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 10.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 10.0
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 25 10.0
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 10.0
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 10.0
>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
activity |Schizosaccharomyces pombe|chr 3|||Manual
Length = 133
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 257 LNSLHWIHLRTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLV 424
+NS + + GID ++ P+ EL R+K + K Q+ + T V + +
Sbjct: 55 INSTLYSFYKLNGIDASERPVMQELQRVKNYISKIQQAEKNVNPKTEAVNTSNAAI 110
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 637 TLTENFKKSP*SPINHVGVTYKIXQFSLKIPK 542
TL + F+KS + H G+T KI F++ K
Sbjct: 186 TLLDAFRKSTIASTEHGGITQKIGAFTVPFDK 217
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 354 NIVAFILS-SSSLMGCFVGSMPFVRKCIQCSEFKGI 250
+I+ IL+ ++++ G FVGS+ R + C E K I
Sbjct: 277 SIIGQILNRNANIRGIFVGSVSMFRDMVACIEAKDI 312
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 72 VLGTFYVLIINCFFFSLIIIN 10
+L FY +I CFFFS ++IN
Sbjct: 1156 MLDGFYQSVI-CFFFSFLVIN 1175
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 90 YGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSL 218
YG + K N ENL++ +++ LD P+ ++SL
Sbjct: 5 YGSMEHRKKSFRNNENLEQQFHPLREELDNAGPINDRTSELSL 47
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 72 LNWDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPA 224
++W G++A+ K L LI+ LDK + + YD+M L A
Sbjct: 368 MDWILNNGDMAEVKQ---KRRKLASQLIDAYWNLDKYIRARSVYDRMGLIA 415
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 443 HQRAPVKQLNKRIKFSDNEE 502
HQR VK+LN R+K ++ E+
Sbjct: 65 HQRQVVKELNDRVKGTELED 84
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +2
Query: 326 ELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYD 442
E+ + TM W K Q+R ++A + ++ +YD
Sbjct: 142 EIFIAELTMRAWLHAKKNQRRTLQRSDIANAVSKSEMYD 180
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 81 DFKYG-ELAKDKDFVNNVENLKEN 149
+++Y ++AKDK + NN++ L EN
Sbjct: 355 NYEYAKQIAKDKTYSNNLDYLDEN 378
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 546 QNS*KLQIINSFKNYSSLSENFIRL 472
Q+ + + NSF N ++LS+NF RL
Sbjct: 148 QSDLPITLENSFSNLNTLSDNFDRL 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,758
Number of Sequences: 5004
Number of extensions: 49252
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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