Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060348.seq
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259...    36   0.030
12_02_0269 - 16617292-16618852,16622763-16623562                       29   4.5  
11_03_0068 + 9564354-9565180,9566658-9568704                           28   7.8  
01_01_0307 + 2513678-2513772,2514064-2514682                           28   7.8  

>08_01_1022 +
           10323158-10323393,10323486-10323531,10325887-10325941,
           10326027-10326107,10326189-10326400
          Length = 209

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 284 RTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRP-----TVNVEVAKRLVRNGL 436
           R  G+DP +HPIK E  R+     K    +D  K P     TVN + A R + + L
Sbjct: 79  RCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNTQAAARFIGHSL 134


>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 78  WDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKK-NYDKMSLPAQIELDLFFV 251
           +D K  + + + DF NN+ +LKE L  +  +L KL  ++  N  K  L  ++    +FV
Sbjct: 23  YDLKEIQFSTEFDFKNNIWHLKEELSCMNALLQKLPNMEALNIQKRELRNKVRELAYFV 81


>11_03_0068 + 9564354-9565180,9566658-9568704
          Length = 957

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 284 RTKGIDPTKHPIKDELLRIKATMLKWQEVKD 376
           R KG+D     +KDEL  + A +LK +++ D
Sbjct: 30  RLKGVDSEILSLKDELSSMNALLLKLEDIDD 60


>01_01_0307 + 2513678-2513772,2514064-2514682
          Length = 237

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 333 SSSSLMGCFVGSMPFVRKCIQCSEFKGIQKTNLVQSE 223
           S+SSLM C+V S+  +++C + +  KG    +LV ++
Sbjct: 25  SNSSLMICYVTSLLEIKQCPRANTEKGKHVVHLVSNK 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,134
Number of Sequences: 37544
Number of extensions: 261729
Number of successful extensions: 618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)