Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060348.seq
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.5
SB_13715| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-10) 30 1.5
SB_40525| Best HMM Match : Integrase_Zn (HMM E-Value=0.099) 30 1.5
SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.5
SB_24482| Best HMM Match : KID (HMM E-Value=0.045) 29 3.4
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 4.5
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 28 6.0
SB_57156| Best HMM Match : DUF1456 (HMM E-Value=4.9) 28 7.9
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -2
Query: 504 YSSLSENFIRLFSCFTGAL*WSYRPFRTKRFATSTLTVGLFWRSFTSC 361
Y +NFIR F+ G L W F+T+ TS+ VG F C
Sbjct: 1531 YCGTDDNFIRAFNRLDGTLLWK---FKTEGAVTSSTRVGTDGTLFVGC 1575
>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1400
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 296 IDPTKHPIKDELLRIKATMLKW----QEVKDRQKRPTVNVEVAKRLVRNGLYDHQR 451
+DPT+H +LLR+ A +L++ + DR+ P + E+ K R ++D QR
Sbjct: 1028 MDPTRHSTLRKLLRVTALVLRFVHNLRNPTDRRNGPLMVTELTK-AERTWIHDRQR 1082
>SB_13715| Best HMM Match : Peptidase_A17 (HMM E-Value=3.6e-10)
Length = 596
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 296 IDPTKHPIKDELLRIKATMLKW----QEVKDRQKRPTVNVEVAKRLVRNGLYDHQR 451
+DPT+H +LLR+ A +L++ + DR+ P + E+ K R ++D QR
Sbjct: 249 MDPTRHSTLRKLLRVTALVLRFFHNLRNPTDRRNGPLMVTELTK-AERTRIHDRQR 303
>SB_40525| Best HMM Match : Integrase_Zn (HMM E-Value=0.099)
Length = 263
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 296 IDPTKHPIKDELLRIKATMLKW----QEVKDRQKRPTVNVEVAKRLVRNGLYDHQR 451
+DPT+H +LLR+ A +L++ + DR+ P + E+ K R ++D QR
Sbjct: 1 MDPTRHSTLRKLLRVTALVLRFVHNLRNPTDRRNGPLMVTELTK-AERTWIHDRQR 55
>SB_25887| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1378
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 296 IDPTKHPIKDELLRIKATMLKW----QEVKDRQKRPTVNVEVAKRLVRNGLYDHQR 451
+DPT+H +LLR+ A +L++ + DR+ P + E+ K R ++D QR
Sbjct: 942 MDPTRHSTLRKLLRVTALVLRFVHNLRNPTDRRNGPLMVTELTK-AERTWIHDRQR 996
>SB_24482| Best HMM Match : KID (HMM E-Value=0.045)
Length = 1714
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 105 KDKDFVNNVENLKENLIEVQQVLDKL 182
+++D++N ++ LK L E ++++DKL
Sbjct: 1200 EERDYINKIKKLKAKLKEKREIIDKL 1225
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 295 HRSHKTSHQR*TAQNKSYNVKVAG----SEGSPEKTHR*R*SGETFSTEWSVRPSEGSRE 462
+R SH+R + SYN KV SEG + +H S + S+ S+
Sbjct: 135 NRDRDVSHKRPLPKPDSYNEKVQSPDRSSEGGSDSSHSQSDSSSSSSSSDGESGSDSDSS 194
Query: 463 TTKQTNK 483
TT +T K
Sbjct: 195 TTSKTTK 201
>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 132 ENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDL 242
+N+++NL + +LD L +K+NY + L + DL
Sbjct: 639 KNVRQNLFFINHMLDLLRSVKQNYHHVKLSGEFCKDL 675
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 356 KWQEVKDRQKRPTVNVEVAKRLVRNGLY-DHQRAPVKQLNKRIKFSD 493
+W + + +KRP V R + N Y D+ P ++ +K +K D
Sbjct: 46 EWSRLSEEEKRPFVTEAKRLRTIHNQKYPDYSYKPRRRKSKTVKSKD 92
>SB_57156| Best HMM Match : DUF1456 (HMM E-Value=4.9)
Length = 501
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = -3
Query: 140 QIFNIVHEIFVFGEFAVFK 84
++FN ++E+FVFG+F ++K
Sbjct: 371 KMFNRIYEMFVFGKFRIWK 389
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,282,422
Number of Sequences: 59808
Number of extensions: 325941
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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