Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060348.seq
(676 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and ... 33 0.47
AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA... 33 0.47
AF145625-1|AAD38600.1| 924|Drosophila melanogaster BcDNA.GH0496... 29 4.4
AE014298-3155|AAN08997.1| 924|Drosophila melanogaster CG14476-P... 29 4.4
AE014298-3154|AAN08996.1| 924|Drosophila melanogaster CG14476-P... 29 4.4
AE014298-3153|AAN08995.1| 924|Drosophila melanogaster CG14476-P... 29 4.4
AE014298-3152|AAF45432.1| 924|Drosophila melanogaster CG14476-P... 29 4.4
AE014298-3151|AAG22460.1| 924|Drosophila melanogaster CG14476-P... 29 4.4
L41642-1|AAA85085.1| 773|Drosophila melanogaster lin19 protein ... 29 5.8
BT010290-1|AAQ23608.1| 774|Drosophila melanogaster LD20253p pro... 29 5.8
AF136343-1|AAD33676.1| 774|Drosophila melanogaster Cul-1 protein. 29 5.8
AE013599-533|AAM68872.1| 774|Drosophila melanogaster CG1877-PD,... 29 5.8
AE013599-532|AAM68871.1| 774|Drosophila melanogaster CG1877-PC,... 29 5.8
AE013599-531|AAF59175.1| 774|Drosophila melanogaster CG1877-PB,... 29 5.8
AE013599-530|AAF59174.1| 774|Drosophila melanogaster CG1877-PA,... 29 5.8
>U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and fatty
acid-bindingglycoprotein protein.
Length = 3351
Score = 32.7 bits (71), Expect = 0.47
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 78 WDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKK 197
W E+ KD ++++ EN+KE L + +QV DK++ L K
Sbjct: 2424 WHIVESEINKDSEYIS--ENIKERLKKSRQVTDKIVKLAK 2461
>AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA
protein.
Length = 3351
Score = 32.7 bits (71), Expect = 0.47
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 78 WDFKYGELAKDKDFVNNVENLKENLIEVQQVLDKLLPLKK 197
W E+ KD ++++ EN+KE L + +QV DK++ L K
Sbjct: 2424 WHIVESEINKDSEYIS--ENIKERLKKSRQVTDKIVKLAK 2461
>AF145625-1|AAD38600.1| 924|Drosophila melanogaster BcDNA.GH04962
protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 242 VFCIPLNSLHWI---HLRTKGIDPTKHPIKDE 328
V + +N+ +W+ HLR K +PT HP ++E
Sbjct: 151 VLVVSVNAKNWLYFEHLRQKAQEPTSHPAENE 182
>AE014298-3155|AAN08997.1| 924|Drosophila melanogaster CG14476-PE,
isoform E protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 242 VFCIPLNSLHWI---HLRTKGIDPTKHPIKDE 328
V + +N+ +W+ HLR K +PT HP ++E
Sbjct: 151 VLVVSVNAKNWLYFEHLRQKAQEPTSHPAENE 182
>AE014298-3154|AAN08996.1| 924|Drosophila melanogaster CG14476-PD,
isoform D protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 242 VFCIPLNSLHWI---HLRTKGIDPTKHPIKDE 328
V + +N+ +W+ HLR K +PT HP ++E
Sbjct: 151 VLVVSVNAKNWLYFEHLRQKAQEPTSHPAENE 182
>AE014298-3153|AAN08995.1| 924|Drosophila melanogaster CG14476-PC,
isoform C protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 242 VFCIPLNSLHWI---HLRTKGIDPTKHPIKDE 328
V + +N+ +W+ HLR K +PT HP ++E
Sbjct: 151 VLVVSVNAKNWLYFEHLRQKAQEPTSHPAENE 182
>AE014298-3152|AAF45432.1| 924|Drosophila melanogaster CG14476-PB,
isoform B protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 242 VFCIPLNSLHWI---HLRTKGIDPTKHPIKDE 328
V + +N+ +W+ HLR K +PT HP ++E
Sbjct: 151 VLVVSVNAKNWLYFEHLRQKAQEPTSHPAENE 182
>AE014298-3151|AAG22460.1| 924|Drosophila melanogaster CG14476-PA,
isoform A protein.
Length = 924
Score = 29.5 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 242 VFCIPLNSLHWI---HLRTKGIDPTKHPIKDE 328
V + +N+ +W+ HLR K +PT HP ++E
Sbjct: 151 VLVVSVNAKNWLYFEHLRQKAQEPTSHPAENE 182
>L41642-1|AAA85085.1| 773|Drosophila melanogaster lin19 protein
protein.
Length = 773
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 629 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 672
>BT010290-1|AAQ23608.1| 774|Drosophila melanogaster LD20253p
protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 630 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 673
>AF136343-1|AAD33676.1| 774|Drosophila melanogaster Cul-1 protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 630 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 673
>AE013599-533|AAM68872.1| 774|Drosophila melanogaster CG1877-PD,
isoform D protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 630 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 673
>AE013599-532|AAM68871.1| 774|Drosophila melanogaster CG1877-PC,
isoform C protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 630 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 673
>AE013599-531|AAF59175.1| 774|Drosophila melanogaster CG1877-PB,
isoform B protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 630 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 673
>AE013599-530|AAF59174.1| 774|Drosophila melanogaster CG1877-PA,
isoform A protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.8
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 123 NNVENLKENLIEVQQVLDKLLPLKKNYDKMSLPAQIELDLFFVY 254
+N + +ENLI+V Q+L K L + ++ SL + ++LF Y
Sbjct: 630 DNTQTQQENLIQVLQILLKAKVLTSSDNENSLTPESTVELFLDY 673
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,751,447
Number of Sequences: 53049
Number of extensions: 469918
Number of successful extensions: 1315
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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