Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060348.seq
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical ...    31   0.99 
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   5.3  
AL110484-20|CAB54412.1|  195|Caenorhabditis elegans Hypothetical...    28   5.3  
Z22173-1|CAA80125.1|  398|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    28   7.0  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    27   9.2  

>AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical
           protein F58E1.4 protein.
          Length = 477

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 460 HGSPLMVVQTIPY*TFRHFNVNGGSFLAILHFLPL*HCSFYSEQFIF 320
           H +P M    +P   F + N+ GG F+A    L    C  Y E F+F
Sbjct: 255 HDNPNMTTLGLPKLNFLYDNLAGGQFVANFENLHPDFCVTYGEMFLF 301


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 534 KLQIINSFKNYSSLSENFIRLFSCFT 457
           KLQ++NS   Y + S  F+ +F C T
Sbjct: 6   KLQLLNSTLTYKNWSPAFVGIFGCIT 31


>AL110484-20|CAB54412.1|  195|Caenorhabditis elegans Hypothetical
           protein Y38E10A.20 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 329 LLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYDHQ 448
           L+R +AT  +W++V++R K   V + +  R  +     HQ
Sbjct: 71  LIRREATKARWEQVRERLKLSRVKISMRDRKRKASKSSHQ 110


>Z22173-1|CAA80125.1|  398|Caenorhabditis elegans Hypothetical
           protein C15H7.3 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 287 TKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLY 439
           T  +D  K   KD+    K    K +E K+  K P    E AKR+V NG +
Sbjct: 73  TTRMDDQKDEKKDDKKEEKKEERK-EEKKEEVKEPWSEEEPAKRMVANGFF 122


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 342 FILSSSSLMGCFVGSMPFVRKCIQCSEFKGIQKTNLVQSELVVTFCRNFSS 190
           F+L  ++ +G  +  MP + KC      K  ++ NL+Q+ +     RNF +
Sbjct: 175 FVLDLNTGLGENILEMPRIAKCQTIGLVKSEKQKNLIQTNIDYAKSRNFKN 225


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 96   ELAKDKDFVNN-VENLKENLIEVQQVLDKLLPLKK 197
            +L  DK  V+  + NL+E L+E+Q   DKLL  K+
Sbjct: 967  KLLLDKTNVDQRLRNLEERLVELQDAYDKLLKEKR 1001


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 108  DKDFVNNVENLKENLIEVQQVLDKLL 185
            +K+ ++ VENLK  + ++QQ  DKL+
Sbjct: 1368 NKELIHVVENLKSQMGQIQQDRDKLM 1393


>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 78   WDFKYGELAKDKDFVNN 128
            WDF  G+L K+  FVNN
Sbjct: 1949 WDFNQGDLPKEAVFVNN 1965


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 78   WDFKYGELAKDKDFVNN 128
            WDF  G+L K+  FVNN
Sbjct: 1949 WDFNQGDLPKEAVFVNN 1965


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
            F15G9.4b protein.
          Length = 5198

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 78   WDFKYGELAKDKDFVNN 128
            WDF  G+L K+  FVNN
Sbjct: 1949 WDFNQGDLPKEAVFVNN 1965


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
            F15G9.4a protein.
          Length = 5175

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 78   WDFKYGELAKDKDFVNN 128
            WDF  G+L K+  FVNN
Sbjct: 1949 WDFNQGDLPKEAVFVNN 1965


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 311 HPIKDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYDHQR-APVKQLNKRIKF 487
           +PIK E L++     K +  +DRQ  P     +A R++R+ +    R   +++  KR+  
Sbjct: 82  NPIKPEPLKVSFNHYKRRSQRDRQIHPN---HMASRILRDMMARQGRHITIEEAEKRLMD 138

Query: 488 SDNEE 502
            D EE
Sbjct: 139 VDFEE 143


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
            precursor protein.
          Length = 5198

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 78   WDFKYGELAKDKDFVNN 128
            WDF  G+L K+  FVNN
Sbjct: 1949 WDFNQGDLPKEAVFVNN 1965


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,111
Number of Sequences: 27780
Number of extensions: 267150
Number of successful extensions: 706
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)