Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060348.seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 320 KDELLRIKATMLKWQEVKDRQKRPTVNVEVAKRLVRNGLYD 442
           K EL R  A   KW+   +++K    ++   +R+  NGL D
Sbjct: 857 KMELARHAAD--KWRGAIEKRKTLRASIAAQRRIQSNGLND 895


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 375 IARKDPPLTLKW 410
           +A  DPPLT+ W
Sbjct: 634 VAAGDPPLTISW 645


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 126 NVENLKENLIEVQQ 167
           NVE L ENL+  QQ
Sbjct: 696 NVEVLPENLVNAQQ 709


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 414 FATSTLTVGLFWRSF 370
           FA STL V L W SF
Sbjct: 207 FAPSTLVVMLSWFSF 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,648
Number of Sequences: 438
Number of extensions: 3268
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)