Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060348.seq
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57720.1 68416.m06430 protein kinase, putative contains prote...    28   6.6  
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ...    28   6.6  
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    27   8.7  
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    27   8.7  

>At3g57720.1 68416.m06430 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 359

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 401 VEVAKRLVRNGLYDHQRAPVKQLNKRIKFSDNEE*FLKELII-CN 532
           V+  K+ +R+G  + ++   K + +   F DN   FLKELI  CN
Sbjct: 5   VKKLKQSLRSGSLEKRKEKEKDIQEEKWFLDNGSIFLKELIADCN 49


>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
           Ca(2+)-dependent nuclease [Arabidopsis thaliana]
           GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
          Length = 323

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 359 WQEVKDRQKRPTVNVEVAKRLVRNGLYDHQRAPVKQL 469
           W++ K R K P    E A RLV   L +HQ+A V+ L
Sbjct: 66  WKQAKPRPKTP----EEASRLVIAALKNHQKADVEGL 98


>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
            (ZWICHEL) identical to kinesin-like protein GI:2224925
            from [Arabidopsis thaliana]
          Length = 1260

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 266  LHWIHLRTKGIDPTKHPIKDELLRIKATMLKWQEV--KDRQKRPTVNVE 406
            L+   +RT   DP+KH    E++R+K  +  W+E   K  ++   V++E
Sbjct: 1201 LYASRVRTIVNDPSKHISSKEMVRLKKLVAYWKEQAGKKGEEEDLVDIE 1249


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
            (ZWICHEL) identical to kinesin-like protein GI:2224925
            from [Arabidopsis thaliana]
          Length = 1259

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 266  LHWIHLRTKGIDPTKHPIKDELLRIKATMLKWQEV--KDRQKRPTVNVE 406
            L+   +RT   DP+KH    E++R+K  +  W+E   K  ++   V++E
Sbjct: 1200 LYASRVRTIVNDPSKHISSKEMVRLKKLVAYWKEQAGKKGEEEDLVDIE 1248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,971
Number of Sequences: 28952
Number of extensions: 237720
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)