Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060347.seq
         (634 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    23   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.5  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   8.6  

>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 215 LFENQIEKEVVTPLGD 262
           LF++QI  E+VT LGD
Sbjct: 34  LFQDQIVDEMVTVLGD 49


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 537 ADPPPCCRKTALPTPSPI-NEIVQ 469
           + PPP  + +A PTPS   N+I Q
Sbjct: 328 SSPPPPYQISAQPTPSQSPNQIYQ 351


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 405 HPRHDRHWVSS 437
           H RH+RH+ SS
Sbjct: 89  HDRHERHFESS 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,017
Number of Sequences: 336
Number of extensions: 3506
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)