Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060347.seq
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    54   2e-08
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   2.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.3  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   6.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   6.9  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    25   6.9  

>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 29/60 (48%), Positives = 37/60 (61%)
 Frame = +1

Query: 313 LARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRT 492
           LARHG  H   P++V  RANI ALK +G   I++ +A GSL E+  P D V+    IDRT
Sbjct: 57  LARHGVGHIYTPTEVPSRANIAALKSLGVLAIVSFSAVGSLREDIPPEDFVLPTQIIDRT 116


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 430 SLVEEYRPGDLVILDDF 480
           ++V  YRPGDL+++ D+
Sbjct: 210 NIVSNYRPGDLILIHDY 226


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 610 WPALXSAARALPQYAGRMGRWHTPRGPPSV 521
           WPAL   A+AL   A   G   TP  PP +
Sbjct: 612 WPALGMYAKALDAIAFHQGALVTPSVPPVI 641


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +2

Query: 332 NINFNLAM*TIELIFGH*SKSAALTSSPRPPLGL*LKNTGLGIWSYWTISLI 487
           N++F +++   +L+F    +    T      +    KN  + IW+YW ++LI
Sbjct: 550 NVDFEVSVLASQLVFFVKHRDFKRTLITMKAISKLQKNFDVRIWNYWLVALI 601


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 193 TSDNSDLYFSYIAHIDGTIQHYTHRY 116
           TS  S +Y  Y  H+D  IQ+Y   +
Sbjct: 226 TSSTSMVYLLYSVHVDKIIQYYVDSF 251


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 606 PRXTVRRALSHNTPAAWAGG 547
           PR TV R +SH     W GG
Sbjct: 466 PRGTVGRPVSHRKGRGWRGG 485


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 211 RIIEARTSDNSDLYFSYIAHIDGTIQHYTH 122
           R     +S+NS  +FS I   DGT+   TH
Sbjct: 263 RFYNYESSENSVAFFSAINPADGTVLPLTH 292


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 504 VQFYDNTEGGPRGVCHLPMRPAYCG 578
           + +YD   G P+G    P  P YCG
Sbjct: 141 LDYYDRPFGWPKGGFPGPQGPFYCG 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,668
Number of Sequences: 5004
Number of extensions: 56036
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)