Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060347.seq
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0392 + 24629528-24630442 33 0.25
10_07_0185 + 13908914-13909576,13911739-13912668 31 0.58
04_04_1314 - 32583061-32583393,32583630-32583926,32585130-32585132 30 1.3
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 30 1.3
07_01_0962 - 8075975-8077282 30 1.8
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 29 2.3
06_03_1310 + 29238644-29240260 29 3.1
03_01_0320 - 2510907-2512190 29 3.1
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 29 3.1
01_05_0407 - 21883009-21883950 29 3.1
02_01_0318 + 2140691-2140861,2141152-2141328 29 4.1
08_01_0528 + 4587439-4587711 28 5.4
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 28 5.4
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 28 5.4
07_03_0655 - 20312389-20312560,20312785-20312936,20313049-203132... 28 7.1
03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196 28 7.1
02_05_1086 + 33994295-33994402,33994485-33994674,33994734-339947... 28 7.1
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 28 7.1
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 7.1
11_06_0272 + 21806681-21806908,21806991-21807233,21807318-218074... 27 9.4
07_01_0704 - 5304639-5305571 27 9.4
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 27 9.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 9.4
>05_05_0392 + 24629528-24630442
Length = 304
Score = 32.7 bits (71), Expect = 0.25
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 624 VPPRLGPRXTVRRALSHNTPAAWAGGTRRADPPPCCRKTALP 499
VPPR R + RRA N+PA+ T+ PPP C P
Sbjct: 225 VPPRPCGRASPRRAQETNSPASSTTTTQSRGPPPHCSSPPPP 266
>10_07_0185 + 13908914-13909576,13911739-13912668
Length = 530
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 549 GTRRADPP--PCCRKTALPTPSPINEIVQYDQIPRPVFFN 436
G RR+D P C++ + SP E V D++PRPV F+
Sbjct: 208 GDRRSDYPFMSLCKEGYIVPRSPAVEAVPMDKLPRPVIFH 247
>04_04_1314 - 32583061-32583393,32583630-32583926,32585130-32585132
Length = 210
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 573 NTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQI 457
+TP WAGGTR P +++ L T I+E V++ ++
Sbjct: 88 HTPPNWAGGTREPQ-PKATKRSMLRTVVSISEAVRFREL 125
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 610 WPALXSAARALPQYAGRMGRWHTPRG 533
+P++ S+A A P Y G M W PRG
Sbjct: 212 YPSVHSSATAGPPYTGTMASWAFPRG 237
>07_01_0962 - 8075975-8077282
Length = 435
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = -2
Query: 618 PRLGPRXTVRRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSP 487
PRL PR RR L+ N A R A P P RK P P P
Sbjct: 19 PRLSPRRRRRRLLAANATTA-----RGALPLPALRKPTKPPPPP 57
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 582 LSHNTPAAWAGGTRRADPPPCCRKTALP-TPSPINEIVQYDQIPRPVFFN 436
LS AW G ++ A+ P C ALP P+ + + Y ++ P+ N
Sbjct: 1081 LSDRIDLAWTGSSQLANDPSKCSIEALPVVPAALVDDPSYQRVIAPIRIN 1130
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 623 YPLDLARAXQCGARSPTIRRPHGQVAHAA-RTPL 525
+P D ++A QC A PT RRP G+ A R+PL
Sbjct: 353 HPFDCSKA-QCQATPPTTRRPGGRTPLAPHRSPL 385
>03_01_0320 - 2510907-2512190
Length = 427
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = -1
Query: 601 LXSAARALPQYAGRMGRWHTPRGPPSVL----S*NCTSDPKSYQ*NRPI*PDPQACILQL 434
L AA P+ G+ G W+TP PP V S C+ +P + PDP I +
Sbjct: 9 LPPAAPPQPR-RGKPGCWNTPPAPPKVCHYWKSGRCSRNPCRFLHTDA--PDPAPPIAAV 65
Query: 433 ETQWRSWRGCEC 398
T+ +W C
Sbjct: 66 NTRSNTWVNPSC 77
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 558 WAG--GTRRADPPPCCRKTALPTPSPINEIVQYDQIPRP 448
WA G + PPP C+ +P P P + V++ +P P
Sbjct: 968 WAAPAGFQHPVPPPQCKILPVPIPIPAHGSVKFPPVPIP 1006
>01_05_0407 - 21883009-21883950
Length = 313
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +2
Query: 494 GVGSAVLRQHGGGSARRVPPA 556
GVGS L+ GGG A R PPA
Sbjct: 274 GVGSRSLQLQGGGGASRPPPA 294
>02_01_0318 + 2140691-2140861,2141152-2141328
Length = 115
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 633 MARVPPRLGPRXTVRRALSHNTPAAWA---GGTRR 538
+A +P R+GPR + RR S WA GGT R
Sbjct: 77 VAGLPMRMGPRGSTRRGTSPTMRRCWADLGGGTPR 111
>08_01_0528 + 4587439-4587711
Length = 90
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 446 TGLGIWSYWTISLIGLGVGSAVLRQHGGGSARRVPPAHAAGVLWESARRTV 598
+GL W+Y SL G + + +L+ HGG A A AA E R V
Sbjct: 30 SGLCRWNYALRSLHGAAMDTLMLQVHGGAGASSPAAAMAAERPEEEGMRRV 80
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -2
Query: 606 PRXTVRRALSHN-TPAAWAGGTRRADPPPCCRKTALPTPSP 487
P T ++ ++H PA P PC A P+P+P
Sbjct: 232 PTATEQKGITHTPAPAPCVSPVAAPSPTPCASPVAAPSPAP 272
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 202 EARTSDNSDLYFSYIAHIDGTIQHYTHRYKNFPISVK 92
+A TS N + +FS H T++H+ +K+ P +VK
Sbjct: 714 DATTSSNGEAFFSSDLHKPKTLEHFWDSFKS-PTAVK 749
>07_03_0655 -
20312389-20312560,20312785-20312936,20313049-20313207,
20313282-20313531,20313627-20313743,20313842-20313907,
20314008-20314183
Length = 363
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 392 SAALTSSPRPPLGL*LKNTGLGIWSYWTI 478
+AA S LG+ L T + IWS+WT+
Sbjct: 173 AAAAHSKKNWALGIFLMTTSVVIWSFWTV 201
>03_04_0135 + 17602684-17602986,17603831-17603854,17606801-17607196
Length = 240
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 479 SLIGLGVGSAVLRQHGGGSARRVPPAHAAGVLW 577
SL+ G + VL GGGS +PP+H+A + W
Sbjct: 3 SLVDDGGEAHVLTDGGGGSGG-LPPSHSASLWW 34
>02_05_1086 +
33994295-33994402,33994485-33994674,33994734-33994789,
33995413-33995550,33995655-33995848,33996125-33996467
Length = 342
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -2
Query: 594 VRRALSHNTPAAWAGGTRRAD--PPPCCRKTALP 499
VRR + + W G T A+ P P C K A P
Sbjct: 34 VRRLIQQGSQLVWVGATNNAEWQPQPGCSKVAGP 67
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 235 FDLILEKRRIIEARTSDNSDLYFSYIAHIDGTIQH 131
F ++ EK R E SD+ YF I H +G I H
Sbjct: 434 FYVLYEKWRRAEVPKSDSVTQYFKNITHANGVIIH 468
>01_05_0439 - 22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 358 NYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVIL---DDFIDRTW 495
++ A +W+L + C +LA A L EY P D I+ D + R W
Sbjct: 1096 DWTARVWSLTRGTCDAVLACHAGPILCVEYSPSDKGIITGSSDGLIRFW 1144
>11_06_0272 +
21806681-21806908,21806991-21807233,21807318-21807444,
21807822-21808036
Length = 270
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 603 RXTVRRALSHNTPAAWAGGTRRA 535
R VRRA S N WAGG R+A
Sbjct: 16 RPLVRRAGSRNGKLWWAGGVRKA 38
>07_01_0704 - 5304639-5305571
Length = 310
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 378 GTEASRLHSHPRHDRHWV 431
G A RLH PRHDR++V
Sbjct: 129 GRLAIRLHQQPRHDRNFV 146
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 624 VPPRLGPRXTVRRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSP 487
+PP L P L A +AG + DP CR+ P P+P
Sbjct: 178 MPPPLAPCTPTTPLLECPRAAVFAGESPGVDPICPCRRPPPPPPTP 223
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/69 (31%), Positives = 27/69 (39%)
Frame = -2
Query: 555 AGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVSAADLLQCP 376
A RR P P A P PSP N D P S G D++A+D
Sbjct: 24 AAAARRPAPSPAA--AAAPAPSPSNPSAVSDSDPSSY-----SSSGEETDLTASDPAAAS 76
Query: 375 NISSIVHIA 349
ISS + +A
Sbjct: 77 VISSYLSVA 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,067
Number of Sequences: 37544
Number of extensions: 462409
Number of successful extensions: 1681
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -