Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060347.seq
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   8e-21
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   32   0.34 
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   2.4  
SB_56324| Best HMM Match : ASC (HMM E-Value=1.3e-14)                   29   4.1  
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_29910| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-06)                 29   4.1  
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)           28   5.5  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              28   5.5  
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)              28   5.5  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.2  
SB_31399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)                 27   9.6  
SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43)           27   9.6  
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_4794| Best HMM Match : Pox_A32 (HMM E-Value=0.085)                  27   9.6  

>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 41/66 (62%), Positives = 50/66 (75%)
 Frame = +1

Query: 316 ARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRTW 495
           A HGRKH + P+D+NYRAN+WALK+ GCTHI+ TTA GSL E YRPG++V  D  IDRT 
Sbjct: 218 AGHGRKHTVMPTDINYRANVWALKEEGCTHIVVTTACGSLTEAYRPGEIVFPDQIIDRTT 277

Query: 496 GRKCSF 513
            R  +F
Sbjct: 278 KRPSTF 283



 Score = 34.7 bits (76), Expect = 0.063
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 510 FYDNTEGGPRGVCHLPMRPAYC 575
           FYD     P GVCH+PM   YC
Sbjct: 283 FYDGQTNSPVGVCHIPMHDPYC 304


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = -2

Query: 627 RVPPRLGPRXTVRRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRP 448
           R  PR  PR + R   SH++P      +R++ P P  R ++ PT S         +  RP
Sbjct: 331 RASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPR-SSRPTSSRKLSRKSSRKSSRP 389

Query: 447 VFFN*RPSGGRGEDVSAAD 391
                 P    G D  ++D
Sbjct: 390 TSGQQSPVNVSGSDTDSSD 408


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 576  HNTPAAWAGGTRRADPPPCCRKTALPTPSPIN 481
            ++TP   A    RA      ++TA PTP P+N
Sbjct: 1734 YSTPQRGAASDARASSDQSAKQTATPTPPPVN 1765


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -2

Query: 624  VPPRLGPRXTVRRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEI 475
            +PP   P  T R  +   TP   A  TR   PPP    +ALP P P  ++
Sbjct: 922  LPPPPPPIQTTRPTVP-TTPTTQASTTRPTPPPP---TSALPPPIPATQV 967


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
 Frame = -2

Query: 591  RRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRG 412
            RRA       A AG  RR   PP   + A  TP P++ I      PRP   + R    RG
Sbjct: 705  RRAYGSRGGEAKAGHRRRKGQPPNDVRAAWKTP-PLSPIRPAQDNPRPPSASRRQRDDRG 763

Query: 411  EDVSAADL-LQCPNISSIVHIARLKLMFSAVSCQQNALDPFDLTLYQYVRGSPNGVTTSF 235
                ++ L  +    SS +  A   ++ +  + + +A DP    +    RG+ NG+  S 
Sbjct: 764  AGKMSSRLRAEAQIASSTLTSAYTPVLDAGEAGRVSAEDPRARRVEH--RGTSNGIDQSR 821

Query: 234  S 232
            S
Sbjct: 822  S 822


>SB_56324| Best HMM Match : ASC (HMM E-Value=1.3e-14)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 304 CVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSLVEEY--RPGDLVILDD 477
           C     HG  +   PS    R  IW++  + C+ I      G+ V  Y  +P + V   D
Sbjct: 79  CSSTTMHGISNVFDPSSATLRKGIWSVVFL-CSFIFCAYEIGNNVRYYLTKPVNTVFKID 137

Query: 478 FID 486
           ++D
Sbjct: 138 YVD 140


>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 367 ANIWALKQVGCTHILATTATGSL 435
           A +W +K+  CTH+L T  T S+
Sbjct: 186 ARVWDIKEARCTHVLDTPHTDSV 208


>SB_29910| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-06)
          Length = 251

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 479 SLIGLGVGSAVLRQHGGGSARRVPPAHAAGVL 574
           +++GL +   VL Q  G S R+V P   AG+L
Sbjct: 105 TILGLAIERYVLLQSEGHSMRKVTPRQVAGIL 136


>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
          Length = 353

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 497 PQVLSMKSSNMTRSPGLYSSTRDPV-AVVAR 408
           PQV    + N T + GL +STR+PV +V+AR
Sbjct: 198 PQVSHSTTPNQTTAQGLTNSTRNPVCSVMAR 228


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 594 VRRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRPVF 442
           VR  +++  P  +A  ++ AD PP    TA P P P ++      IP P F
Sbjct: 425 VRDRINNPPPRPYA--SQFADAPPVSPTTATPPPPPPSQPPPQQFIPSPQF 473


>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
          Length = 398

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 497 PQVLSMKSSNMTRSPGLYSSTRDPV-AVVAR 408
           PQV    + N T + GL +STR+PV +V+AR
Sbjct: 243 PQVSHSTTPNQTTAQGLTNSTRNPVCSVMAR 273


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 492  LGSEVQFYDNTEGGP--RGVCHLPMRPAYCGRARAAL 596
            +   V+ Y    GG   + VC LP+RP  C RAR  +
Sbjct: 2102 ISMRVELYGRRRGGGNNKNVCSLPLRPGRC-RARMVM 2137


>SB_31399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 521 VVVKLHFRPQVLSMKSSNMTRSPGLYSSTRDPVAVVAR 408
           V V L + PQ  + + + MTR PG  SS+   ++   R
Sbjct: 45  VFVPLLYHPQTNTTQQAEMTREPGTQSSSSAAISAFLR 82


>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
          Length = 720

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +1

Query: 196 GLR*SDAFRESNRKGGGHTVGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANI 375
           GLR +D +RE+NR+G      RP +     +  RV   +L+ H R+  L P ++ + A I
Sbjct: 86  GLRPTDFWREANRRG-----RRPDEPY--ERTTRVH-TILSEHIRRSGLDPKNIPFNALI 137

Query: 376 WALKQVGCTHILATTATG 429
                 G T  +     G
Sbjct: 138 AGPTSCGKTQFVVDRLRG 155


>SB_42912| Best HMM Match : K_tetra (HMM E-Value=7.20267e-43)
          Length = 523

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 2/128 (1%)
 Frame = +1

Query: 187 RRFGLR*SDAFRESNRKGGGHTVGRPSDVLIEGQIKRVQCVL--LARHGRKHQLQPSDVN 360
           R+ GL+ ++   +  +  GG    +PS     G ++    VL      G +  +      
Sbjct: 234 RKIGLKDTEIVSQLTQIAGGEMNRQPSACTTHGDMEETHSVLEEQTNAGDRVVINVGGQK 293

Query: 361 YRANIWALKQVGCTHILATTATGSLVEEYRPGDLVILDDFIDRTWGRKCSFTTTRRGVRA 540
           +   I  LK +  T +   T  G+ + E+ P      + F DR  G         R  + 
Sbjct: 294 HETYIGTLKNIPDTRLYWITENGTQLPEFDPN---TSEFFFDRHPGVFAQVLNFYRTGKL 350

Query: 541 ACATCPCG 564
            C    CG
Sbjct: 351 HCPNDVCG 358


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 607 PALXSAARALPQYAGRMGRWHTPRGPPSVLS*NCTSDP 494
           P+  S ARALP Y   +GR +T      V S    S P
Sbjct: 61  PSFRSGARALPSYRSVIGRHYTKSAFQQVDSATTASSP 98


>SB_4794| Best HMM Match : Pox_A32 (HMM E-Value=0.085)
          Length = 369

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/78 (29%), Positives = 36/78 (46%)
 Frame = +1

Query: 196 GLR*SDAFRESNRKGGGHTVGRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANI 375
           GLR +D +RE+NR+G      RP +     +  RV   +L+ H R+  L P ++ + A I
Sbjct: 146 GLRPTDFWREANRRG-----RRPDEPY--ERTTRVH-TILSEHIRRSGLDPKNIPFNALI 197

Query: 376 WALKQVGCTHILATTATG 429
                 G T  +     G
Sbjct: 198 AGPTSCGKTQFVVDRLRG 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,585,371
Number of Sequences: 59808
Number of extensions: 455806
Number of successful extensions: 1218
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)