Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060347.seq
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical p...   103   1e-22
U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical pr...    31   0.52 
U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1 dual-specif...    31   0.52 
U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1 dual-specif...    31   0.52 
AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like phos...    31   0.52 
AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U23168-10|AAC38810.2|  288|Caenorhabditis elegans Hypothetical
           protein B0228.7 protein.
          Length = 288

 Score =  103 bits (247), Expect = 1e-22
 Identities = 47/86 (54%), Positives = 60/86 (69%)
 Frame = +1

Query: 256 GRPSDVLIEGQIKRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATTATGSL 435
           G+PSD ++EG I  V+CVLLARHGRKH + P +VN+RAN+WAL   G   I+A+TA GSL
Sbjct: 31  GKPSDDVVEGTINGVECVLLARHGRKHDIMPGNVNFRANLWALYSRGVDVIIASTACGSL 90

Query: 436 VEEYRPGDLVILDDFIDRTWGRKCSF 513
            E   PG L+  D   DRT GR+ +F
Sbjct: 91  QENVEPGHLLFPDSVFDRTTGRQSTF 116



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 495 GSEVQFYDNTEGGPRGVCHLPMRPAYCGRARAALXSAGQ 611
           G +  F+D +     GVCH+   P Y  + R  L S  +
Sbjct: 111 GRQSTFFDGSYDQAPGVCHIQAHPTYNEKLRQVLISTAE 149


>U41274-7|AAA82463.1| 1610|Caenorhabditis elegans Hypothetical
           protein T04G9.1 protein.
          Length = 1610

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 576 HNTPAAWAGGTRRADPPPCCRKTALPTPS-PINEIVQYDQIPRP 448
           H    ++A   ++  PPP   K  +P PS P+ E ++   +PRP
Sbjct: 113 HRQKRSYASSVQQQKPPPVPIKQQVPVPSVPVIESIEQIPLPRP 156


>U23178-4|AAK68300.1|  606|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform b
           protein.
          Length = 606

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 579 SHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVS 400
           S +TPA+   GT RA  P C R + +   +P+  I + +    P      P  G  +D S
Sbjct: 532 STSTPASSTPGTSRAARPECLRSSGIIISAPVLAITEEEDAESPESGFNEPEVGEEDDDS 591

Query: 399 AA 394
            +
Sbjct: 592 VS 593


>U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform a
           protein.
          Length = 657

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 579 SHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVS 400
           S +TPA+   GT RA  P C R + +   +P+  I + +    P      P  G  +D S
Sbjct: 583 STSTPASSTPGTSRAARPECLRSSGIIISAPVLAITEEEDAESPESGFNEPEVGEEDDDS 642

Query: 399 AA 394
            +
Sbjct: 643 VS 644


>AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like
           phosphatase 1 protein.
          Length = 657

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 579 SHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVS 400
           S +TPA+   GT RA  P C R + +   +P+  I + +    P      P  G  +D S
Sbjct: 583 STSTPASSTPGTSRAARPECLRSSGIIISAPVLAITEEEDAESPESGFNEPEVGEEDDDS 642

Query: 399 AA 394
            +
Sbjct: 643 VS 644


>AF045645-1|AAC02605.1|  301|Caenorhabditis elegans Hypothetical
           protein K02D7.1 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 247 HTVGRPSDVLIEGQI--KRVQCVLLARHGRKHQLQPSDVNYRANIWALKQVGCTHILATT 420
           H VG   +++  G++  K+V C+    H  +H +  +       +  + Q+G   ++ + 
Sbjct: 78  HVVGHKGNMIF-GKLGGKKVVCLQGRFHPYEHNMDLALCTLPVRV--MHQLGIKIMIVSN 134

Query: 421 ATGSLVEEYRPGDLVILDDFI 483
           A G +    R GDL+++ D I
Sbjct: 135 AAGGINAVLRHGDLMLIKDHI 155


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
            C03D6.4 protein.
          Length = 1390

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -2

Query: 633  MARVPPRLGPRXTVRRALSHNTPAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIP 454
            ++  P R+ P  ++  A S +TP+  +    +AD PP  +   +   SP   I     + 
Sbjct: 842  LSMTPRRVMPSSSLFSA-SPSTPSTKSDAATQADEPPIVKTVVVTVESPAKPIASAPAVS 900

Query: 453  RPV 445
             P+
Sbjct: 901  SPL 903


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,120
Number of Sequences: 27780
Number of extensions: 340001
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)