Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060347.seq
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   9.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.9  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   9.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 615 RLGPRXTVRRALSHNTPAAWAGGTRRADPPP 523
           RL  R     A + N  A +  G+RR  PPP
Sbjct: 388 RLPCREVEAAATARNVVAPFLIGSRRTSPPP 418


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 382 LKQVGCTHILATTATGSLV 438
           LKQV   H +ATT  G LV
Sbjct: 170 LKQVEIPHDVATTGKGELV 188


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 295 RVQCVLLARHGRKHQLQPSDVNYRANI 375
           R+ CV+ +RH      +  +V  R N+
Sbjct: 220 RISCVIASRHRNLEATESENVRPRRNV 246


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 436 VEEYRPGDLVILDD 477
           +EEY PG+ VI+ D
Sbjct: 416 IEEYLPGNGVIIPD 429


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 531 PPPCCRKTALPTPSPINEIVQYDQIPRP 448
           P P  R+ A P   P N    Y   PRP
Sbjct: 251 PHPRLRREAKPEAKPGNNRPVYIPQPRP 278


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = -2

Query: 525 PCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVSAADLLQCPNISSIVHIA 349
           P C    L      +++++  +IP  V  N     GR   ++   L    N  ++V+IA
Sbjct: 148 PMCSPKLLTFDLTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIA 206


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +1

Query: 142 FRRYGRCKKNKDRNYRR 192
           + R  RC ++++R YR+
Sbjct: 231 YSRERRCSRDRNREYRK 247


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 531 PPPCCRKTALPTPSPINEIVQYDQIPRP 448
           P P  R+ A P   P N    Y   PRP
Sbjct: 139 PHPRLRREAKPEAEPGNNRPVYIPQPRP 166


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = -2

Query: 525 PCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVSAADLLQCPNISSIVHIA 349
           P C    L      +++++  +IP  V  N     GR   ++   L    N  ++V+IA
Sbjct: 148 PMCSPKLLTFDLTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIA 206


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = -2

Query: 525 PCCRKTALPTPSPINEIVQYDQIPRPVFFN*RPSGGRGEDVSAADLLQCPNISSIVHIA 349
           P C    L      +++++  +IP  V  N     GR   ++   L    N  ++V+IA
Sbjct: 148 PMCSPKLLTFDLTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIA 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,315
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)