Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060347.seq
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19670.1 68416.m02492 FF domain-containing protein / WW domai...    32   0.36 
At2g35150.1 68415.m04311 phosphate-responsive 1 family protein s...    28   4.5  
At3g16240.1 68416.m02049 delta tonoplast integral protein (delta...    27   7.8  

>At3g19670.1 68416.m02492 FF domain-containing protein / WW
            domain-containing protein weak similarity to
            huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
            GI:3341980; contains Pfam profiles PF01846: FF domain,
            PF00397: WW domain
          Length = 960

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +1

Query: 145  RRYGRCKKNKDRNYRRFGLR*SDA--FRESNRKGGGHTVGR-----PSDVLIEGQIKRVQ 303
            RR GR   N+ R  R   ++ +D   F+ES++ GGGH   R      S+  +EG+ KR +
Sbjct: 881  RRSGRDSHNRHRE-RHTSVKENDTDHFKESHKAGGGHKKSRHQRGWVSEAEVEGKEKRRR 939

Query: 304  CVLLARHGRKHQLQPSD 354
                  H ++ +L+  +
Sbjct: 940  KEEAREHTKEEELEDGE 956


>At2g35150.1 68415.m04311 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 323

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 567 PAAWAGGTRRADPPPCCRKTALPTPSPINEIVQYDQIPRP 448
           P AW G + R  P  C    A P P P +  V  +++  P
Sbjct: 184 PYAWVGNSERQCPEMCAYPFAQPKPFPGSGFVAREKMKPP 223


>At3g16240.1 68416.m02049 delta tonoplast integral protein
           (delta-TIP) identical to delta tonoplast integral
           protein (delta-TIP) (GI:9279707)(GB:U39485) [Arabidopsis
           thaliana] (Plant Cell 8 (4), 587-599 (1996))
          Length = 250

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 455 GIWSYWTISLIGLGVGSAVLRQHGGGSARRVPPAHA 562
           G W YW   LIG G+   +      GS+  VP A A
Sbjct: 213 GHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLASA 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,431
Number of Sequences: 28952
Number of extensions: 321185
Number of successful extensions: 848
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)