Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060344.seq
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    27   0.14 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.3  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   6.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 275 LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTG 388
           L  + ++  VYP+     C   + E++ SD P +P  G
Sbjct: 182 LETLSQLMDVYPNNDGTKCLVVTDEASISDAPFFPHRG 219


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 314  PASEGC-TSASSESAPSDQPIYPD 382
            P +  C   ASS  APS  P+ PD
Sbjct: 2279 PENTECHPDASSTMAPSTTPMVPD 2302


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 507 PHQRGPTPSDPAQTQSP 557
           PHQ+ P    P Q Q P
Sbjct: 204 PHQQPPIQQQPNQGQQP 220


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 507 PHQRGPTPSDPAQTQSP 557
           PHQ+ P    P Q Q P
Sbjct: 206 PHQQPPIQQQPNQGQQP 222


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 511 TKEAQHHPIRHKHSHQA 561
           TK   HH I+ +H HQ+
Sbjct: 101 TKFNPHHEIKLQHLHQS 117


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 249 WSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRR 344
           W   Q  R++  F        +QR +A+LQ R
Sbjct: 24  WLNSQQPRNVPNFAAPSTSTAVQRPQAILQVR 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,834
Number of Sequences: 336
Number of extensions: 2812
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)