Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060344.seq
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    95   6e-21
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    29   0.81 
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    28   1.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.3  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.7  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.5  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   7.5  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   9.9  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   9.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 95.5 bits (227), Expect = 6e-21
 Identities = 53/138 (38%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
 Frame = +3

Query: 258 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 437
           IQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRP
Sbjct: 40  IQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRP 99

Query: 438 ETXXXXXXXXXXXXXXXXXXXD-EPHQRGPTPSDPAQTQSPSWSRRRRAHXXXXXXXXXX 614
           ET                     +   + P           +    ++A           
Sbjct: 100 ETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDP 159

Query: 615 XXXXXXXPAXCRKMGVPY 668
                  PA C+KMGVPY
Sbjct: 160 IELVVFLPALCKKMGVPY 177



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = +2

Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           K+P  ++ G N V  L+E KK  LV+IA DVDPIEL
Sbjct: 127 KKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIEL 162



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 211 NPLFEKRPKNFAIGQ 255
           NPLF  RP++F IGQ
Sbjct: 24  NPLFVSRPRSFGIGQ 38


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 330 QPSDAGCGYTWAI----LQIWTSHELAECLTNSKVLWPLLEERIHNFLGL-NLFDH 178
           Q ++ G    W++    + IW  H    C     + WP LE+++  F  L ++F++
Sbjct: 350 QSNEIGTNVLWSMTTSFINIWRIHPGTCCCVVLSIYWPYLEDKLLKFSDLGDIFEY 405


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 530 IRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           +R G N  TK + +     +V+A D +PIE+
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEI 62


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 281 QICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQDYS 400
           Q+   A  YP+ +S    SAS  S+P+     P T +  S
Sbjct: 308 QLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 425
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 551  LCLCRIGWC 525
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 506 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 336
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 532 PIRHKHSHQAGREEEGRTCGHR 597
           P  HKH++    +EE  +C HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 670 KYGTPILRHXAGRKRTQLNRINIMSDDHK 584
           K   P  +H A RKR+   +I I+ DD +
Sbjct: 166 KSSVPNKKHKAERKRSPSPKIEILEDDEE 194


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 7/22 (31%), Positives = 18/22 (81%)
 Frame = +2

Query: 545 NTVTKLVEKKKGALVVIAHDVD 610
           + +T+ V++ +G +++++HDVD
Sbjct: 673 DALTRAVKRFQGGVILVSHDVD 694


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 396 TAKGLFKILEKYR 434
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,361
Number of Sequences: 5004
Number of extensions: 44924
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)