Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060344.seq
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 92 3e-19
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 92 3e-19
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 77 1e-14
08_01_1010 - 10215625-10216335,10216372-10216473 30 1.9
01_01_0790 + 6135910-6136045,6136316-6136497,6136604-6136749,613... 29 3.4
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 7.8
01_06_0203 - 27487469-27489787 28 7.8
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +3
Query: 234 KELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 413
K+ + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LF
Sbjct: 30 KQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLF 89
Query: 414 KILEKYRPE 440
K+L KYRPE
Sbjct: 90 KMLLKYRPE 98
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
K+P ++ G N VT L+E+ K LVVIAHDVDPIEL
Sbjct: 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIEL 158
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 211 NPLFEKRPKNFAIGQA 258
NPLFEKRPK F IG A
Sbjct: 22 NPLFEKRPKQFGIGGA 37
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 92.3 bits (219), Expect = 3e-19
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +3
Query: 234 KELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 413
K+ + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LF
Sbjct: 14 KQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLF 73
Query: 414 KILEKYRPE 440
K+L KYRPE
Sbjct: 74 KMLLKYRPE 82
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/36 (61%), Positives = 27/36 (75%)
Frame = +2
Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
K+P ++ G N VT L+E+ K LVVIAHDVDPIEL
Sbjct: 107 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIEL 142
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 211 NPLFEKRPKNFAIGQA 258
NPLFEKRPK F IG A
Sbjct: 6 NPLFEKRPKQFGIGGA 21
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 77.0 bits (181), Expect = 1e-14
Identities = 37/90 (41%), Positives = 54/90 (60%)
Frame = +3
Query: 171 PIGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 350
P+ +K A + K+ + P +DL RFVRWPK +RIQRQ+ VL++RLK
Sbjct: 10 PVPARKKAAAAAVNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLK 69
Query: 351 VPPPINQFTQTLDKTTAKGLFKILEKYRPE 440
VPP +NQFT+TLDK ++L++ + E
Sbjct: 70 VPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +2
Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
K+P ++ G + VT L+E+ K LVVIAHDVDPIEL
Sbjct: 108 KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIEL 143
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 522 PTPSDPAQTQSPSWSRRRRAH 584
P PSD SP W RRRR H
Sbjct: 216 PVPSDAESGTSPLWRRRRRHH 236
>01_01_0790 +
6135910-6136045,6136316-6136497,6136604-6136749,
6136836-6137103,6137256-6137558,6137657-6137905
Length = 427
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 533 GWCWASLVGLIFLGNLSFSSFPQPL 459
GWC VGL+ LG+ ++F PL
Sbjct: 268 GWCITKAVGLLLLGSAIAAAFADPL 292
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 308 PHPASEGCTSASSESAPSDQP 370
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>01_06_0203 - 27487469-27489787
Length = 772
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 509 GLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQC 381
G+ + L F+ + P FPG L+ + NL+ + + S + C
Sbjct: 375 GVCYPKGLLFNGYKSPAFPGTLYLKVPYSTNLQASSTQSALTC 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,279
Number of Sequences: 37544
Number of extensions: 324030
Number of successful extensions: 1049
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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