Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060344.seq
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             106   2e-23
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        54   1e-07
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          29   2.6  
SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  106 bits (254), Expect = 2e-23
 Identities = 56/137 (40%), Positives = 70/137 (51%)
 Frame = +3

Query: 258 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 437
           IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRP
Sbjct: 45  IQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRP 104

Query: 438 ETXXXXXXXXXXXXXXXXXXXDEPHQRGPTPSDPAQTQSPSWSRRRRAHXXXXXXXXXXX 617
           ET                   +E   + P           S    ++A            
Sbjct: 105 ETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPI 164

Query: 618 XXXXXXPAXCRKMGVPY 668
                 PA CRKM VPY
Sbjct: 165 EIVVWLPALCRKMQVPY 181



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 211 NPLFEKRPKNFAIG 252
           NPL EKRP+NF IG
Sbjct: 29  NPLIEKRPRNFGIG 42


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/39 (61%), Positives = 29/39 (74%)
 Frame = +2

Query: 506 APPKRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           AP K+P  ++ G N +T LVE KK  LVVIAHDVDPIE+
Sbjct: 37  APGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEI 75



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/87 (26%), Positives = 28/87 (32%)
 Frame = +3

Query: 408 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTPSDPAQTQSPSWSRRRRAHX 587
           LFK+L KYRPET                   +E   + P           S    ++A  
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 588 XXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                           PA CRKM VPY
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPY 90


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           +  T+R G   V K + K +   V++A DV PI++
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDV 129


>SB_19818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 652 LRHXAGRKRTQLNRINIMSDDHKCALLLLDQLGDCVCAGSDGVG 521
           +R     +  ++ R+ I +D+  CA LLLD LGD +   +D  G
Sbjct: 149 MRENEAEQGRRMGRVGI-NDNESCAELLLDTLGDEIVNVTDSKG 191


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 332 TSASSESAPSDQPIYPDTG 388
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 279 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 428
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,313
Number of Sequences: 59808
Number of extensions: 353250
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)