Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060344.seq
         (672 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   128   9e-30
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   128   9e-30
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   128   9e-30
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   128   9e-30
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   128   9e-30
M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal degene...    32   0.82 
BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p pro...    32   0.82 
AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi p...    32   0.82 
AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA...    32   0.82 
AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD...    32   0.82 
AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC...    32   0.82 
AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB...    32   0.82 
AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA...    32   0.82 

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  128 bits (308), Expect = 9e-30
 Identities = 68/166 (40%), Positives = 86/166 (51%)
 Frame = +3

Query: 171 PIGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 350
           P+  +K   ++       +  K       +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLK
Sbjct: 21  PLAVKKPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLK 80

Query: 351 VPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTP 530
           VPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                   D   ++ P+ 
Sbjct: 81  VPPPIHQFSQTLDKTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEPKKKPSY 140

Query: 531 SDPAQTQSPSWSRRRRAHXXXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                        +++A                  PA CRKMGVPY
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY 186


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  128 bits (308), Expect = 9e-30
 Identities = 68/166 (40%), Positives = 86/166 (51%)
 Frame = +3

Query: 171 PIGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 350
           P+  +K   ++       +  K       +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLK
Sbjct: 21  PLAVKKPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLK 80

Query: 351 VPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTP 530
           VPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                   D   ++ P+ 
Sbjct: 81  VPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSY 140

Query: 531 SDPAQTQSPSWSRRRRAHXXXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                        +++A                  PA CRKMGVPY
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY 186


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  128 bits (308), Expect = 9e-30
 Identities = 68/166 (40%), Positives = 86/166 (51%)
 Frame = +3

Query: 171 PIGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 350
           P+  +K   ++       +  K       +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLK
Sbjct: 21  PLAVKKPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLK 80

Query: 351 VPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTP 530
           VPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                   D   ++ P+ 
Sbjct: 81  VPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSY 140

Query: 531 SDPAQTQSPSWSRRRRAHXXXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                        +++A                  PA CRKMGVPY
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY 186


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  128 bits (308), Expect = 9e-30
 Identities = 68/166 (40%), Positives = 86/166 (51%)
 Frame = +3

Query: 171 PIGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 350
           P+  +K   ++       +  K       +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLK
Sbjct: 21  PLAVKKPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLK 80

Query: 351 VPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTP 530
           VPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                   D   ++ P+ 
Sbjct: 81  VPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSY 140

Query: 531 SDPAQTQSPSWSRRRRAHXXXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                        +++A                  PA CRKMGVPY
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY 186


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  128 bits (308), Expect = 9e-30
 Identities = 68/166 (40%), Positives = 86/166 (51%)
 Frame = +3

Query: 171 PIGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLK 350
           P+  +K   ++       +  K       +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLK
Sbjct: 21  PLAVKKPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLK 80

Query: 351 VPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTP 530
           VPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                   D   ++ P+ 
Sbjct: 81  VPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSY 140

Query: 531 SDPAQTQSPSWSRRRRAHXXXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                        +++A                  PA CRKMGVPY
Sbjct: 141 VSAGTNTVTKLIEQKKAQLVVIAHDVDPLELVLFLPALCRKMGVPY 186


>M89628-1|AAB00734.1|  661|Drosophila melanogaster retinal
           degeneration C protein protein.
          Length = 661

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIELGS 628
           RP+  ++ T+ VT L +K     +V+ HD+DP +  S
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCES 653


>BT015959-1|AAV36844.1|  603|Drosophila melanogaster RH46370p
           protein.
          Length = 603

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIELGS 628
           RP+  ++ T+ VT L +K     +V+ HD+DP +  S
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCES 595


>AF208396-1|AAF20209.1|  127|Drosophila melanogaster Hoi-polloi
           protein.
          Length = 127

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 524 NTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           N +R G N  TK + +    +VV+A D +PIE+
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64


>AE014296-3312|AAF49044.2|  603|Drosophila melanogaster CG6571-PA,
           isoform A protein.
          Length = 603

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIELGS 628
           RP+  ++ T+ VT L +K     +V+ HD+DP +  S
Sbjct: 559 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCES 595


>AE014296-3311|AAO41219.1|  661|Drosophila melanogaster CG6571-PD,
           isoform D protein.
          Length = 661

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIELGS 628
           RP+  ++ T+ VT L +K     +V+ HD+DP +  S
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCES 653


>AE014296-3310|AAO41218.1|  661|Drosophila melanogaster CG6571-PC,
           isoform C protein.
          Length = 661

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIELGS 628
           RP+  ++ T+ VT L +K     +V+ HD+DP +  S
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCES 653


>AE014296-3309|AAO41217.1|  661|Drosophila melanogaster CG6571-PB,
           isoform B protein.
          Length = 661

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 518 RPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIELGS 628
           RP+  ++ T+ VT L +K     +V+ HD+DP +  S
Sbjct: 617 RPSVAKTATDPVTLLADKISKNTLVVEHDIDPTDCES 653


>AE014134-1677|AAF52798.2|  127|Drosophila melanogaster CG3949-PA
           protein.
          Length = 127

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 524 NTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           N +R G N  TK + +    +VV+A D +PIE+
Sbjct: 32  NQLRKGANEATKTLNRGLADIVVLAGDAEPIEI 64


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,324,834
Number of Sequences: 53049
Number of extensions: 524402
Number of successful extensions: 2262
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2238
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)