Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060344.seq
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   100   8e-22
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    96   2e-20
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    96   2e-20
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    75   3e-14
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    40   0.002
Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical ...    28   6.9  
AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  100 bits (240), Expect = 8e-22
 Identities = 57/158 (36%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
 Frame = +3

Query: 198 QENCESSLREE-AKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 374
           Q+  ++ L E+ A+       IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 25  QKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84

Query: 375 TQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPHQRGPTPSDPAQTQS 554
              LD  +A+  FK+L+KYRPE+                    E   + P          
Sbjct: 85  RTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTI 144

Query: 555 PSWSRRRRAHXXXXXXXXXXXXXXXXXPAXCRKMGVPY 668
                 RRA                  PA CRK  VPY
Sbjct: 145 TRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPY 182


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
 Frame = +3

Query: 198 QENCESSLREE-AKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 374
           Q+  ++ L E+ A+       IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 25  QKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 84

Query: 375 TQTLDKTTAKGLFKILEKYRPET 443
              LD  +A+  FK+L+KYRPE+
Sbjct: 85  RTALDSQSARQAFKLLDKYRPES 107



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 22/36 (61%), Positives = 31/36 (86%)
 Frame = +2

Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           KRPNT+R G NT+T+LVE ++  LV+IAHDV+P+E+
Sbjct: 112 KRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEI 147


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 44/83 (53%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
 Frame = +3

Query: 198 QENCESSLREE-AKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 374
           Q+  ++ L E+ A+       IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 128 QKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187

Query: 375 TQTLDKTTAKGLFKILEKYRPET 443
              LD  +A+  FK+L+KYRPE+
Sbjct: 188 RTALDSHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
 Frame = +3

Query: 198 QENCESSLREE-AKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQF 374
           Q+  ++ L E+ A+       IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 128 QKEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQF 187

Query: 375 TQTLD 389
              LD
Sbjct: 188 RTALD 192


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = -2

Query: 542 CRIGWCWASL-VGLIFLGNL-SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCL 378
           C +G C A L + +  + N  SF SFP  QP+   C +++P F+ N+EKA + C ++Q  
Sbjct: 142 CFLGLCMAILQLSIAAVANYYSFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201

Query: 377 GKLV 366
           G+++
Sbjct: 202 GRII 205


>Z75537-5|CAA99837.3|  335|Caenorhabditis elegans Hypothetical
           protein F18E2.4 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = -2

Query: 548 CLCRIGWCWASLVGLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKL 369
           CL   GWC A    L+ + N  F    +P+    F  + VF        S +L+   G L
Sbjct: 112 CLGLSGWCMACGSTLLLVINRVFDVLCRPVSEFLFDGKRVF-------FSIALIYTYGTL 164

Query: 368 VDRRGHFQTTLKYSLLTLDAD--ILGPSYKSGQVTSW 264
           V            +++   AD   + P YK+ ++T W
Sbjct: 165 VSMFSP-SIIFNSAIMAWIADPLTIDPEYKTDEITDW 200


>Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical
           protein F48C5.1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = -2

Query: 548 CLCRIGWCWASLVGLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKL 369
           CLC +GW  A+   +I    +   S   P  P C    PV    +   +   L  CL K 
Sbjct: 156 CLCEVGWTGAA-CDMISEPPVRVDSVVTP--PVCAYWPPVVTLLVFIVIIVLLAYCLYKF 212

Query: 368 VDRRGHFQTTLKYSLLTLDAD--ILGPSYKSGQVT 270
             R  H  +  KYS  T++ +  I  P   SG+ T
Sbjct: 213 KVRNPHHYS--KYSTTTINNNNTISKPPMVSGEYT 245


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 358 LRSTNLPRHWTRLQLRA 408
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>AC006722-2|AAK68422.1|  296|Caenorhabditis elegans Hypothetical
           protein Y19D10A.9 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 308 PHPASEGCTSASSESAPSDQPIYPDTG 388
           P   S G T       PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221


>AC006645-7|AAF39840.1|  296|Caenorhabditis elegans Hypothetical
           protein F56A4.2 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 308 PHPASEGCTSASSESAPSDQPIYPDTG 388
           P   S G T       PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 18  SNLFASAIFAESLVYDLGHVSFRGL 92
           ++LF  ++++  +VYD+ HV F GL
Sbjct: 717 NHLFIWSVYSPKVVYDMAHVIFFGL 741


>AL031629-3|CAA20976.1|  555|Caenorhabditis elegans Hypothetical
           protein Y106G6D.3 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 528 PSDPAQTQSPSWSRRRRA 581
           P D  + ++P+W RRRRA
Sbjct: 242 PEDDREAEAPNWRRRRRA 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,057
Number of Sequences: 27780
Number of extensions: 257533
Number of successful extensions: 727
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)