BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV060344.seq (672 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 95 5e-20 At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 94 7e-20 At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 6.5 At5g07010.1 68418.m00794 sulfotransferase family protein similar... 27 8.6 At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 8.6 >At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) Length = 257 Score = 94.7 bits (225), Expect = 5e-20 Identities = 42/89 (47%), Positives = 59/89 (66%) Frame = +3 Query: 174 IGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 353 + +K A++ K+ + P +DLSR+++WPK IR+QRQK +L++RLKV Sbjct: 9 VAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKV 68 Query: 354 PPPINQFTQTLDKTTAKGLFKILEKYRPE 440 PP +NQFT+TLDK A LFK+L KYRPE Sbjct: 69 PPALNQFTKTLDKNLATSLFKVLLKYRPE 97 Score = 48.8 bits (111), Expect = 3e-06 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +2 Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622 K+P ++ G N VT L+E+ K LVVIAHDVDPIEL Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIEL 157 >At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA Length = 256 Score = 94.3 bits (224), Expect = 7e-20 Identities = 41/69 (59%), Positives = 53/69 (76%) Frame = +3 Query: 234 KELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 413 K+ + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A LF Sbjct: 28 KQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLF 87 Query: 414 KILEKYRPE 440 KIL KYRPE Sbjct: 88 KILLKYRPE 96 Score = 49.6 bits (113), Expect = 2e-06 Identities = 23/39 (58%), Positives = 28/39 (71%) Frame = +2 Query: 506 APPKRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622 A K+P ++ G N VT L+E+ K LVVIAHDVDPIEL Sbjct: 118 AESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIEL 156 Score = 30.3 bits (65), Expect = 1.2 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = +1 Query: 211 NPLFEKRPKNFAIGQA 258 NPLFE+RPK F IG A Sbjct: 20 NPLFERRPKQFGIGGA 35 >At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC) family protein (MSS2) similar to SMC-related protein MSS2 [Arabidopsis thaliana] GI:9965743; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1053 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 467 QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 378 QP P CF L P L LE + +CS++ + Sbjct: 992 QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021 >At5g07010.1 68418.m00794 sulfotransferase family protein similar to steroid sulfotransferase 3 [Brassica napus] GI:3420008, steroid sulfotransferase 1 [Brassica napus] GI:3420004; contains Pfam profile PF00685: Sulfotransferase domain Length = 359 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = -3 Query: 574 LLLDQLGDCVCAGSDGVGPLW 512 +LLDQ D C G G GP W Sbjct: 214 VLLDQAFDLYCRGVIGFGPFW 234 >At3g09210.1 68416.m01095 KOW domain-containing transcription factor family protein ; est match Length = 333 Score = 27.5 bits (58), Expect = 8.6 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 497 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 402 L N S S P+P+FPGC +R + + + ++ Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,675,385 Number of Sequences: 28952 Number of extensions: 249603 Number of successful extensions: 720 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 718 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1422784080 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -