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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060344.seq
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            95   5e-20
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    94   7e-20
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    28   6.5  
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    27   8.6  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   8.6  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 42/89 (47%), Positives = 59/89 (66%)
 Frame = +3

Query: 174 IGGQKG*AQENCESSLREEAKELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKV 353
           +  +K  A++          K+      + P +DLSR+++WPK IR+QRQK +L++RLKV
Sbjct: 9   VAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKV 68

Query: 354 PPPINQFTQTLDKTTAKGLFKILEKYRPE 440
           PP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 69  PPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +2

Query: 515 KRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           K+P  ++ G N VT L+E+ K  LVVIAHDVDPIEL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIEL 157


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 41/69 (59%), Positives = 53/69 (76%)
 Frame = +3

Query: 234 KELCYWSGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLF 413
           K+      + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LF
Sbjct: 28  KQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLF 87

Query: 414 KILEKYRPE 440
           KIL KYRPE
Sbjct: 88  KILLKYRPE 96



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +2

Query: 506 APPKRPNTIRSGTNTVTKLVEKKKGALVVIAHDVDPIEL 622
           A  K+P  ++ G N VT L+E+ K  LVVIAHDVDPIEL
Sbjct: 118 AESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIEL 156



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 211 NPLFEKRPKNFAIGQA 258
           NPLFE+RPK F IG A
Sbjct: 20  NPLFERRPKQFGIGGA 35


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 467  QPLFPGCFSLRPVFLQNLEKALSCSLVQCL 378
            QP  P CF L P  L  LE + +CS++  +
Sbjct: 992  QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 574 LLLDQLGDCVCAGSDGVGPLW 512
           +LLDQ  D  C G  G GP W
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFW 234


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 497 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 402
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,385
Number of Sequences: 28952
Number of extensions: 249603
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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