Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060343.seq
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   1.0  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 519  TGPKKRRVRKTKVQLDYFQLCALRSIVNGLLRCVREV 629
            T   KR     K  LD+ +LC+L   ++ L++   E+
Sbjct: 1285 TNLPKRETEVRKKSLDFGKLCSLHHHLSKLIKSFNEI 1321



 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 166 LTTHRTRLYSSF-NVLKCKLTLFNTIRCFVSMFLV 65
           L   R   Y S  + L+   T+FN + C+++  LV
Sbjct: 511 LRVQRFNNYQSLAHYLRVFFTVFNVVHCYLASELV 545


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 142 YSSFNVLKCKLTLFNTIRCFVSMFLVKVFVY 50
           +SSF +LK   +L  +    ++ FLV +F Y
Sbjct: 355 FSSFGMLKISRSLLTSFGGALTTFLVILFQY 385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,970
Number of Sequences: 336
Number of extensions: 2443
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)