Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060343.seq
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   3.4  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   3.4  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   3.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   4.5  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.8  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.8  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 428  LHDIFDWESVASVLFFAFEKFYD 360
            LHD +DWE+  + +  A EK  D
Sbjct: 1164 LHDGYDWEATRATISSAIEKLCD 1186


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +2

Query: 245 TRPQPARASAACTGRTKASSRQEKKRGDRWPSPRTHL 355
           TR +P     A      ASSRQE    D  PS  T L
Sbjct: 261 TRSEPLAGEGASIDAENASSRQETTPSDSRPSTLTSL 297


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = +3

Query: 45  RK*TKTFTRNILTKQRIVLNRVSLHFKTLNDEYKRVRCVVNSDV 176
           +K T  F+++ILTK+ +   ++ +HF+     ++ + C+ + D+
Sbjct: 52  KKITNVFSKSILTKRALREIKLLIHFR----NHRNITCIYDLDI 91


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 643  LPSVGTSLTHRSNPLTMLLKAHSWK*SNC 557
            L S+ T LT R + L  LLK + W  SNC
Sbjct: 1488 LRSLVTLLTRRFDKLHNLLKGYLWLFSNC 1516


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 272 AACTGRTKASSRQEKKRGDRWPSPRTHL*GHKIFRKRKTEQ 394
           AA T   K ++ ++KKR D  P PR  +      RKR   Q
Sbjct: 18  AATTTEKKTAASRDKKRSDSPPVPRELVAQSTTSRKRDPNQ 58


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 348 LIYKVIKFF--ESEKQNRGYAFPVENVVKRACAATG-LSESTIKRI 476
           LI KV  +   ESEK    Y   ++NV+K+  +  G ++ S ++R+
Sbjct: 468 LIQKVYSYITAESEKVGNRYGETLDNVIKQHLSRIGSVASSAVQRL 513


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 21/86 (24%), Positives = 35/86 (40%)
 Frame = -2

Query: 688 PPANSLXSCLAAPRILPSVGTSLTHRSNPLTMLLKAHSWK*SNCTLVFLTLLFLGPVIRV 509
           PPA+   S    PRILPS+    T   NP    ++      ++  + +  L  L P+   
Sbjct: 233 PPAHLSASSTVGPRILPSLPKDTT-EDNPALERVETT----ASLDMDYKPLEPLAPIQEA 287

Query: 508 EVPSARKPSRFILLIVLSDSPVAAHA 431
            V    +P   +    L DS ++  +
Sbjct: 288 PVEDTSEPFSSVPEATLDDSDISTES 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,565
Number of Sequences: 5004
Number of extensions: 39230
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)