Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060343.seq
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0683 - 35522534-35522647,35523009-35523143,35523224-355233...    30   2.0  
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    29   2.6  
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923...    29   4.6  
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817...    28   6.1  

>03_06_0683 -
           35522534-35522647,35523009-35523143,35523224-35523346,
           35523640-35523741,35523884-35524090,35524634-35524748,
           35524839-35525048,35525135-35525234,35525448-35525609,
           35525737-35526073,35526472-35526678,35527284-35527736
          Length = 754

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 363 IKFFESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGL 491
           +KF+ S  QN  +   +EN+ KRA  AT L + +++R   DGL
Sbjct: 212 LKFYISHAQNLPF---IENMEKRAQGATKLLDGSLERCFVDGL 251


>12_01_1109 -
           11726818-11727719,11728225-11728394,11730407-11730483,
           11730559-11730645,11730730-11730816,11731887-11731991,
           11732133-11732168,11733636-11733754,11733862-11734067,
           11735854-11735906,11735986-11736153,11736507-11736591,
           11737845-11738023,11738939-11739070,11739209-11739295,
           11739920-11739972,11740820-11740892,11741791-11742442,
           11743165-11743229
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 257 PARASAACTGRTKASSRQ---EKKRGDRWPSPRTHL 355
           P R   AC GR+ AS+ +   EKKR D    P  HL
Sbjct: 4   PGRRGFACRGRSAASAAERTKEKKRRDSSKQPLVHL 39


>01_05_0146 +
           18591235-18591345,18591662-18591830,18592282-18592334,
           18592369-18592487,18592618-18593698
          Length = 510

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 616 HRSNPLTMLLKAHSWK*SNC--TLVFLTLLFLGPVIRVEVPSARKPSRFILLIV 461
           HR + L +L  A   + SN   ++V   +LF+GPV+   +P    P+RF  +++
Sbjct: 244 HRLSRLVLLSPAGFHEDSNVVFSMVEKLILFVGPVLAPFIPGLYIPTRFFRMLL 297


>01_01_1031 +
           8169505-8169553,8169831-8169905,8170395-8170438,
           8170633-8170742,8170960-8170997,8171055-8171186,
           8171298-8171351,8171424-8171525,8172679-8172764,
           8172870-8172973,8173056-8173124,8173156-8173209,
           8173210-8173325,8173420-8173454,8173637-8173779,
           8174105-8174227,8174305-8174398
          Length = 475

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -3

Query: 456 RTVRSR--HTLASRHFRLGKRSLCSVFRFRKIL*PYK*VRGLGHRSPLFFSCRLLAFVRP 283
           RT+ +   H   +RH+R+ ++          I   +    GLGHR+ L  + RLL FV+ 
Sbjct: 362 RTIEAEAAHGTVTRHYRVHQKG--GETSTNSIASIFAWTTGLGHRAKLDDNKRLLDFVQK 419

Query: 282 VQAA 271
           ++AA
Sbjct: 420 LEAA 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,859
Number of Sequences: 37544
Number of extensions: 250156
Number of successful extensions: 708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)