Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060343.seq
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         31   0.67 
SB_42634| Best HMM Match : Trypan_PARP (HMM E-Value=0.12)              28   8.2  

>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = +3

Query: 309 KKKKEAIDGQARELIYKVIKFFE-SEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRD 485
           K++K+  D + +E   KV K      + N   ++ + +++K+  A    S   +K IK +
Sbjct: 172 KERKDEEDDKGKE-DEKVEKNSSLPSRHNFSSSYSIASILKKPSAEEDGSAEIVKGIKVE 230

Query: 486 GLRAEGTSTRMTGPKKRRVRKTKVQLDYFQLCALRSIVNGLLRCVREVPTLGKI 647
           GL  E +S+      KRR ++   Q     L     ++     C  ++P  GKI
Sbjct: 231 GLVFESSSSATQEKDKRRRQRLDQQAQI--LLPTGHVLMSSNGCTNQIPGQGKI 282


>SB_42634| Best HMM Match : Trypan_PARP (HMM E-Value=0.12)
          Length = 436

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 544 LTLLFLGPVIRVEVPSARKPSRFILLIVL 458
           L ++ LG ++RV V S RKP+  I L+V+
Sbjct: 288 LAVVSLGELVRVHVSSQRKPALKISLLVM 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,352,241
Number of Sequences: 59808
Number of extensions: 295126
Number of successful extensions: 796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)