Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060343.seq
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.6  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 473 PF-NSALGQSGRGTRSLHDIFDWESVASVLFFAFEKFYDLINEFA 342
           PF  S  G +    + + DIF+ ES+A ++      F+ L+N  A
Sbjct: 283 PFMKSEYGANNVQYQGVQDIFNTESIAKIMSKNGVLFFGLMNNSA 327


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 372 FESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGL 491
           +   K+N  YA  ++ V ++    TGL ++ I+ +K D L
Sbjct: 332 YAQHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVL 371


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 372 FESEKQNRGYAFPVENVVKRACAATGLSESTIKRIKRDGL 491
           +   K+N  YA  ++ V ++    TGL ++ I+ +K D L
Sbjct: 370 YAQHKENELYANLMKIVHEKQQEITGLIQNIIQEMKNDVL 409


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 306 GKKKKEAIDGQARELIYKVIKFFESEKQNRGYAFPVENVVKRA 434
           GK+    I G     +  +  +   + +NRG  FPV  V KR+
Sbjct: 264 GKRDAAGIYGSNSSTVGTIFGY--QDMRNRGNNFPVYQVEKRS 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,324
Number of Sequences: 438
Number of extensions: 2739
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)