Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060343.seq
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18460.1 68414.m02303 lipase family protein similar to triacy...    31   0.95 
At1g19460.1 68414.m02424 kelch repeat-containing F-box family pr...    29   2.9  
At1g12330.1 68414.m01425 expressed protein                             29   2.9  
At1g73920.2 68414.m08561 lipase family protein similar to lipase...    27   8.9  
At1g73920.1 68414.m08560 lipase family protein similar to lipase...    27   8.9  
At1g19470.1 68414.m02425 kelch repeat-containing F-box family pr...    27   8.9  

>At1g18460.1 68414.m02303 lipase family protein similar to
           triacylglycerol lipase, gastric precursor (EC 3.1.1.3)
           {Canis familiaris} [SP|P80035]
          Length = 701

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = -2

Query: 616 HRSNPLTMLLKAHSWK*SN-C-TLVFLTLLFLGPVIRVEVPSARKPSRFILLIV 461
           HR + L +L  A     SN C TL+  T LFLGPV+   VP+   P++F  +++
Sbjct: 461 HRLSRLILLSPAGFHYDSNMCFTLMEYTFLFLGPVLSRIVPAFYIPTKFFRMLL 514


>At1g19460.1 68414.m02424 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 416

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 375 ESEKQNRGYAFPVENVVKRACAA 443
           E EK NR  +FP+ N +  AC A
Sbjct: 46  EEEKDNRSVSFPIPNELTEACVA 68


>At1g12330.1 68414.m01425 expressed protein
          Length = 505

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 TGTRPQPARASAACTGRTKASSRQEKKRGDRWPSPRTHL*GHKIFRKRKTEQ 394
           T   P+P+ A+AA   R+ +SS  +  R ++W      L  HK+ +  K ++
Sbjct: 143 TRRSPKPSSATAALPPRSSSSSAADASREEQWRLAVAEL-SHKLIQATKKKE 193


>At1g73920.2 68414.m08561 lipase family protein similar to lipase
           GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
          Length = 635

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 616 HRSNPLTMLLKAHSWK*SNC--TLVFLTLLFLGPVIRVEVPSARKPSRFILLIV 461
           HR + L +L  A   + SN   T+V    LF+ PV+   VP+   P+RF  +++
Sbjct: 394 HRLSRLILLSPAGFHEDSNLGFTIVEYIFLFISPVLARIVPAFYIPTRFFRMLL 447


>At1g73920.1 68414.m08560 lipase family protein similar to lipase
           GB:CAA74737 [SP|O46108] from [Drosophila melanogaster]
          Length = 704

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 616 HRSNPLTMLLKAHSWK*SNC--TLVFLTLLFLGPVIRVEVPSARKPSRFILLIV 461
           HR + L +L  A   + SN   T+V    LF+ PV+   VP+   P+RF  +++
Sbjct: 463 HRLSRLILLSPAGFHEDSNLGFTIVEYIFLFISPVLARIVPAFYIPTRFFRMLL 516


>At1g19470.1 68414.m02425 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 412

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 375 ESEKQNRGYAFPVENVVKRACAA 443
           E E+ NR  +FP+ N +  AC A
Sbjct: 46  EEEEDNRSVSFPIPNELTEACVA 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,981,364
Number of Sequences: 28952
Number of extensions: 202683
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)