Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060342.seq
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   1.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.4  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   7.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.2  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   9.5  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 301 PLSNVETRPSPYSQHASHPSDHS 369
           P +  + RP+P S++A  P+D++
Sbjct: 252 PATKSKPRPAPASRNAPEPADNN 274


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 314 TFDSGVGSTSPVRPTLLHELLGMTHGPVHPAIED 213
           T  +G    SP +  L+H L+   +   HP+ ED
Sbjct: 303 TLCNGSKGISPEQEELIHRLVYFQNEYEHPSEED 336


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 138 PVRTCRQKQHSHS 100
           P+ TC +KQH  S
Sbjct: 240 PITTCNKKQHLES 252


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 429  CESHGTHCNHRTH 391
            C+   TH N+RTH
Sbjct: 998  CDKTETHTNNRTH 1010


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 631 ADARQPAATSSXERERDGS 575
           ADA Q + +   +R++DGS
Sbjct: 66  ADALQTSCSKCSQRQKDGS 84


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 448 AARGKPAYLLPFFC 489
           A  G P   LPFFC
Sbjct: 115 APTGHPGAALPFFC 128


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 448 AARGKPAYLLPFFC 489
           A  G P   LPFFC
Sbjct: 7   APTGHPGAALPFFC 20


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 631 ADARQPAATSSXERERDGS 575
           ADA Q + +   +R++DGS
Sbjct: 66  ADALQTSCSKCSQRQQDGS 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,828
Number of Sequences: 336
Number of extensions: 3868
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)