Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060342.seq
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    27   3.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.5  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   4.5  

>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 245 THGPVHPAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSIATHCHVHFPTWD 72
           TH  VHPA ++HA   + +L      T   IP      E     ++A +     P W+
Sbjct: 70  THPSVHPANDEHAAFQISVLERHPFTTQTFIPMCRSSDEQAYLIAVAPNAPDGMPDWN 127


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 389 MWVRWLQWVPWLSH 430
           +WV  LQW  W+SH
Sbjct: 423 VWVNSLQWKTWISH 436


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 242 HGPVHPAIEDHAQSLLKLLV 183
           H P HP +ED AQ L KL V
Sbjct: 122 HDPDHPTLEDVAQMLGKLKV 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,123
Number of Sequences: 5004
Number of extensions: 62721
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)