Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060342.seq
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0024 - 22216105-22217856                                         29   3.5  
02_01_0489 - 3522907-3523363,3523519-3523610,3525755-3526171,352...    29   4.6  
11_01_0478 - 3691581-3691616,3691693-3691842,3691915-3692955,369...    28   6.1  
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076...    28   6.1  
10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056     28   8.0  
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897...    28   8.0  
03_02_1029 - 13488535-13493037                                         28   8.0  

>04_04_0024 - 22216105-22217856
          Length = 583

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 534 LSVLLASNPCLDCGDPSRSLSXXEVAAGCRASALXFVVISALIVGRG 674
           LS L++S  C +  D S +L       GCR  A  +  + + ++GRG
Sbjct: 183 LSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRG 229


>02_01_0489 -
           3522907-3523363,3523519-3523610,3525755-3526171,
           3526488-3526565,3527021-3527292,3529346-3529541
          Length = 503

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 238 P*VIPRSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVG 396
           P ++  S   N G   +VLP   S+   +PSP S +AS  +D    YH    G
Sbjct: 226 PPLVDSSISFNHGGYEEVLPCFSSSHHQQPSPASMNASAAADDDQDYHHLSEG 278


>11_01_0478 -
           3691581-3691616,3691693-3691842,3691915-3692955,
           3693007-3693459
          Length = 559

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 674 STAHDQSRDDDEXEGRRPAARSNFXXGKGTRRVSAIKAWI 555
           +TA  Q  +DD+ E +          G+G RR +A K W+
Sbjct: 149 ATATLQKEEDDDEEDKEDDGGEETYRGRGYRRWAAPKRWV 188


>03_06_0448 -
           34005581-34005655,34005735-34005830,34006669-34007616,
           34007684-34007851,34007908-34008099,34008164-34008346,
           34008414-34008590,34008667-34012074
          Length = 1748

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 179 VALGVLAAIVRDPRLLDELDRESSPGVHGAMWGALEMYCPHH-CQMW 316
           +A  VLA+I RD R L      SS    G +   L +Y P +  Q+W
Sbjct: 244 LAPAVLASIYRDLRELKAFLSSSSAAATGELLSPLSVYAPFYLLQLW 290


>10_08_0376 + 17334283-17334454,17335122-17335387,17335520-17336056
          Length = 324

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 296 GSTSPVRPTLLHELLGMTHGPVHPAIEDHAQSLL-KLLVPLGAGTGAMIPG 147
           GST P  PT +  LLG +  P      DH  + +  L+V +  G   MI G
Sbjct: 183 GSTDPSSPTTMAPLLGSSPDPTVVDRFDHRSAAVPPLMVLMQGGGDQMISG 233


>07_03_0333 - 16888606-16888740,16889463-16889570,16889691-16889790,
            16890473-16890560,16890637-16893253
          Length = 1015

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 244  VIPRSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDH 366
            V+  +SW      GD LP  ++  ++  S Y +   HP +H
Sbjct: 915  VLTAASWKLQVIQGDFLPEVVNIYDSTSSSYRKATKHPGEH 955


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 164  LFLHLVALGVLAAIVRDPRLLDEL--DRESSPGVHGAM 271
            L L++V  G LAA+   P LLD++   +++ P +HG +
Sbjct: 996  LNLNIVGRGFLAALEAKPTLLDQIREAQKNDPDMHGLL 1033


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,413,446
Number of Sequences: 37544
Number of extensions: 496399
Number of successful extensions: 1528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)