Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060342.seq
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 29   4.7  
SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)        28   6.2  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              28   6.2  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   6.2  
SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)                28   8.2  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +2

Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 232
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P + +E
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEE 60


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 116 FCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 232
           FCL +      LG++HLF  L+ + V  A++ D   +DE
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVDNLEIDE 532


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 244 VIPRSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDH 366
           V+P +S  NV  T D+  + +   ET P P   H  HP  H
Sbjct: 121 VMPSTSSFNVSATKDITSSTVKK-ETVPPPQVHHMIHPRCH 160


>SB_40567| Best HMM Match : Beta-lactamase (HMM E-Value=9.7e-28)
          Length = 1006

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = -1

Query: 468 SRFPTSGAVDHNQCESHGTHCNHRTHIRIMVY*AVVTRM*SMLRVWAGTSFHI*QWCGQY 289
           S+  +S    H++ ES   +C +R  + +++   ++  + + L +W  TS +  +  G Y
Sbjct: 600 SKEKSSKPAGHSR-ESSRRYCGYRVLLALILVLVILALLMTGLFIWKSTSCNGNEAKGAY 658

Query: 288 ISSA-PHIAP*TPG 250
             +A P +AP  PG
Sbjct: 659 AYTANPTVAPFIPG 672


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
 Frame = +1

Query: 247  IPRSSWSNVGRTGDVL-----PTPLSNVETRPSPYSQH--ASHPSDHSLIYHDADVGAMV 405
            IPR S +NV   G+V+     P P+       SP++ H  +S  S+ SL+Y    V + V
Sbjct: 1144 IPRPSQANVNTPGEVIPQGKPPVPIGRHTHEVSPHAFHDQSSPYSNQSLVYQRHGVNSHV 1203


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 121 PTCSDWHNYPGIMAPVPAP 177
           P C DW  Y GI AP  AP
Sbjct: 14  PACYDWCCYGGISAPTQAP 32


>SB_5745| Best HMM Match : Extensin_2 (HMM E-Value=0.43)
          Length = 607

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 295 PTPLSNVETRPSPYSQHASHPSDHS 369
           P P S V T+P P+S   + P  HS
Sbjct: 100 PQPHSAVHTKPQPHSAATTQPQPHS 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,786,626
Number of Sequences: 59808
Number of extensions: 534440
Number of successful extensions: 1541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)