Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060342.seq
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein. 50 6e-06
BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein. 50 6e-06
BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein. 50 6e-06
AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated tra... 50 6e-06
AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated tr... 50 6e-06
AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens ... 50 6e-06
AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane trans... 50 6e-06
AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated tr... 50 6e-06
AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated tr... 50 6e-06
D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein. 46 2e-04
CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein. 46 2e-04
BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated pr... 46 2e-04
BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated pr... 46 2e-04
BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated pr... 46 2e-04
AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein. 46 2e-04
AC098828-1|AAY24172.1| 38|Homo sapiens unknown protein. 41 0.004
AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory r... 41 0.005
AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated pro... 40 0.006
AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated pro... 40 0.006
AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein. 40 0.006
AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein. 38 0.034
AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein. 35 0.31
AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein. 35 0.31
AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein ... 35 0.31
D63476-1|BAA09763.2| 802|Homo sapiens KIAA0142 protein. 30 8.9
>BC038117-1|AAH38117.1| 317|Homo sapiens LAPTM4B protein protein.
Length = 317
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 39.5 bits (88), Expect = 0.011
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + YGA + + A+++PFFC QI
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICATATYGAYKQRAAWIIPFFCYQI 200
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 201 FDFALNMLVAITVLIYPNSIQEYIRQ 226
>BC031021-1|AAH31021.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQ 135
>BC014129-1|AAH14129.1| 226|Homo sapiens LAPTM4B protein protein.
Length = 226
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQ 135
>AY261384-1|AAO84265.1| 370|Homo sapiens lysosome-associated
transmembrane protein 4 beta protein.
Length = 370
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 159 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 194
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 194 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 253
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 254 FDFALNMLVAITVLIYPNSIQEYIRQ 279
>AY057051-1|AAL17908.2| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta, variant 1 protein.
Length = 317
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 200
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 201 FDFALNMLVAITVLIYPNSIQEYIRQ 226
>AK075326-1|BAC11549.1| 226|Homo sapiens protein ( Homo sapiens
cDNA PSEC0001 fis, clone NT2RM1000066, moderately
similar to Lysosomal-associated transmembrane protein 4
beta. ).
Length = 226
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQ 135
>AJ276485-1|CAB81951.1| 283|Homo sapiens integral membrane
transporter protein protein.
Length = 283
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 72 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 107
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 107 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 166
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 167 FDFALNMLVAITVLIYPNSIQEYIRQ 192
>AF527412-1|AAP14034.1| 317|Homo sapiens lysosomal associated
transmembrane protein 4 beta variant 2 protein.
Length = 317
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 106 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 141
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 141 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 200
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 201 FDFALNMLVAITVLIYPNSIQEYIRQ 226
>AF317417-1|AAK69595.1| 226|Homo sapiens lysosomal-associated
transmembrane protein 4 beta protein.
Length = 226
Score = 50.4 bits (115), Expect = 6e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
CC C HVRTGTI+LG W+L ++ V L +L + + DP
Sbjct: 15 CCLCCHVRTGTILLGVWYLIINAVVLLILLSALADP 50
Score = 40.3 bits (90), Expect = 0.006
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 325 PSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMI--YGAARGKPAYLLPFFCXQI 498
P Y+ +S DA++ + + + + + + YGA + + A+++PFFC QI
Sbjct: 50 PDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQI 109
Query: 499 FDFASPF*RQLGYLCYLRQIHALIAE 576
FDFA + L Y I I +
Sbjct: 110 FDFALNMLVAITVLIYPNSIQEYIRQ 135
>D14696-1|BAA03522.2| 254|Homo sapiens KIAA0108 protein.
Length = 254
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
S+R CC C HVRTGTIILG+W++ ++L+ +L V P
Sbjct: 32 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 75
Score = 37.9 bits (84), Expect = 0.034
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YGA + +L+PFFC ++FDF + L YL +I + +
Sbjct: 107 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 166
Query: 583 RVPF 594
P+
Sbjct: 167 DFPY 170
>CR456758-1|CAG33039.1| 233|Homo sapiens LAPTM4A protein.
Length = 233
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
S+R CC C HVRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 37.9 bits (84), Expect = 0.034
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YGA + +L+PFFC ++FDF + L YL +I + +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 145
Query: 583 RVPF 594
P+
Sbjct: 146 DFPY 149
>BC093075-1|AAH93075.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
S+R CC C HVRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 37.9 bits (84), Expect = 0.034
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YGA + +L+PFFC ++FDF + L YL +I + +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 145
Query: 583 RVPF 594
P+
Sbjct: 146 DFPY 149
>BC003158-1|AAH03158.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
S+R CC C HVRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 36.7 bits (81), Expect = 0.078
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YG+ + +L+PFFC ++FDF + L YL +I + +
Sbjct: 86 VSVLMFIISSMLVYGSISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 145
Query: 583 RVPF 594
P+
Sbjct: 146 DFPY 149
>BC000421-1|AAH00421.1| 233|Homo sapiens lysosomal-associated
protein transmembrane 4 alpha protein.
Length = 233
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
S+R CC C HVRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 37.9 bits (84), Expect = 0.034
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YGA + +L+PFFC ++FDF + L YL +I + +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 145
Query: 583 RVPF 594
P+
Sbjct: 146 DFPY 149
>AY359028-1|AAQ89387.1| 215|Homo sapiens MTP protein.
Length = 215
Score = 45.6 bits (103), Expect = 2e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDP 217
S+R CC C HVRTGTIILG+W++ ++L+ +L V P
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHP 54
Score = 37.9 bits (84), Expect = 0.034
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YGA + +L+PFFC ++FDF + L YL +I + +
Sbjct: 86 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 145
Query: 583 RVPF 594
P+
Sbjct: 146 DFPY 149
>AC098828-1|AAY24172.1| 38|Homo sapiens unknown protein.
Length = 38
Score = 41.1 bits (92), Expect = 0.004
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 86 SERGSEWLCCFCLHVRTGTIILGSWHL 166
S+R CC C HVRTGTIILG+W++
Sbjct: 11 SDRFYSTRCCGCCHVRTGTIILGTWYM 37
>AY464186-1|AAS46603.1| 281|Homo sapiens complement inhibitory
receptor protein.
Length = 281
Score = 40.7 bits (91), Expect = 0.005
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 334 YSQHASHPSDHSLIYHDAD-VGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFA 510
Y+Q S I H + + VT ++A M++GA +P +LLPFF Q+FD
Sbjct: 8 YTQKNERGSHEVKIKHFSPYIAVCVTTFSLAFCCFMVHGAITKQPTHLLPFFFIQVFDLT 67
Query: 511 SPF*RQLGYLCYLRQIHALI 570
LG++ + +I
Sbjct: 68 ICLIHILGFMSSTSDLRLMI 87
>AY219177-1|AAO64359.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 40.3 bits (90), Expect = 0.006
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHL 166
CC C HVRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AY219176-1|AAO64358.1| 124|Homo sapiens lysosome-associated
protein transmembrane 4 beta protein.
Length = 124
Score = 40.3 bits (90), Expect = 0.006
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHL 166
CC C HVRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AY198226-1|AAO63563.1| 124|Homo sapiens LAPTM4B protein.
Length = 124
Score = 40.3 bits (90), Expect = 0.006
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2
Query: 110 CCFCLHVRTGTIILGSWHL 166
CC C HVRTGTI+LG W+L
Sbjct: 106 CCLCCHVRTGTILLGVWYL 124
>AC079145-1|AAX88938.1| 196|Homo sapiens unknown protein.
Length = 196
Score = 37.9 bits (84), Expect = 0.034
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 403 VTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDFASPF*RQLGYLCYLRQIHALIAETR 582
V+V ++ +++YGA + +L+PFFC ++FDF + L YL +I + +
Sbjct: 49 VSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLP 108
Query: 583 RVPF 594
P+
Sbjct: 109 DFPY 112
>AL139100-5|CAI20353.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 34.7 bits (76), Expect = 0.31
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 232 TGP*VIPRSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADV 393
+GP +P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1139 SGPESVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AL033520-3|CAI20282.1| 1440|Homo sapiens RP3-349A12.1 protein.
Length = 1440
Score = 34.7 bits (76), Expect = 0.31
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 232 TGP*VIPRSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADV 393
+GP +P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1139 SGPESVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>AB126777-1|BAD32740.1| 1440|Homo sapiens ICBP90 binding protein 1
protein.
Length = 1440
Score = 34.7 bits (76), Expect = 0.31
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 232 TGP*VIPRSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADV 393
+GP +P S SNV V +PL N + SP + + PS LI+H V
Sbjct: 1139 SGPESVPPGSLSNVSDNAGVQGSPLVNNYGQGSPAANSSVSPSGEDLIFHPVSV 1192
>D63476-1|BAA09763.2| 802|Homo sapiens KIAA0142 protein.
Length = 802
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 620 PGVGPRLRRHLCFDRGPWIIKGL 688
P R RR LC++RGPW GL
Sbjct: 13 PSGAARQRRPLCWERGPWASLGL 35
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,171,262
Number of Sequences: 237096
Number of extensions: 2823263
Number of successful extensions: 6777
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 6365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6772
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -