Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060342.seq
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 31 0.59
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 31 0.59
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 28 7.2
U88311-4|AAB42344.1| 537|Caenorhabditis elegans Udp-glucuronosy... 28 7.2
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 28 7.2
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 28 7.2
Z70307-7|CAA94336.2| 531|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 89 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 187
E E+ C C C HV+TG I+G H+ + L L
Sbjct: 33 ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.59
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 89 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 187
E E+ C C C HV+TG I+G H+ + L L
Sbjct: 33 ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -3
Query: 685 PFNYPRPTIKAEMTTK----XRADARQPAATSSXERERDGSPQSRHGFDASNTD 536
P YPRPT+ A +TT+ + P T++ E +P+S S+TD
Sbjct: 104 PITYPRPTVGAPITTQQVLITETTTQPPTTTTTLETP---APESTPSMAPSHTD 154
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 277 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 366
R+ D LPT L NV TRP+ + P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 265 SNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYHDADVGAMVTVGTMALTLIMIY 444
SN+ R L +S T SP S +++ PSD Y D + V +G AL L++ +
Sbjct: 70 SNMPRPTQGLSEIMSTTTTTGSPLSIYSTTPSDAPETYSDTVLS--VVLGFYALLLLIAF 127
Query: 445 GA 450
+
Sbjct: 128 AS 129
>U88311-4|AAB42344.1| 537|Caenorhabditis elegans
Udp-glucuronosyltransferase protein28 protein.
Length = 537
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 343 HASHPSDHSLIYHDADVGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCXQI 498
H S + + +D + A VT G + T+ + Y GKP ++P F QI
Sbjct: 356 HFSKWVPQTALLNDPRLSAFVTHGGLGSTMELAYS---GKPGVVIPVFADQI 404
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 343 HASHPSDHSLIYHDADVGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCXQI 498
H S + + +D + VT G + T+ + Y GKPA ++P F QI
Sbjct: 356 HFSKWVPQTALLNDPRLSVFVTHGGLGSTMELAYS---GKPAVVIPVFADQI 404
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 343 HASHPSDHSLIYHDADVGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCXQI 498
H S + + +D + VT G + T+ + Y GKPA ++P F QI
Sbjct: 356 HFSKWVPQTALLNDPRLSVFVTHGGLGSTMELAYS---GKPAVVIPVFADQI 404
>Z70307-7|CAA94336.2| 531|Caenorhabditis elegans Hypothetical
protein C39E9.7 protein.
Length = 531
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 349 SHPSDHSLIYHDADVGAMVTVGTMALTLIMIYGAARGKPAYLLPFFCXQIFDF 507
SH + SL +H A GA++T+ + ++I+ K FC +F++
Sbjct: 241 SHMASSSLGWHSAHYGAVITIVIIFFVFVLIHFDEDFKERAGTIGFCNAMFEY 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,036,541
Number of Sequences: 27780
Number of extensions: 375824
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -