Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060342.seq
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23590.1 68416.m02967 expressed protein                             32   0.41 
At5g58410.1 68418.m07314 expressed protein contains similarity t...    29   3.8  
At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA synt...    29   3.8  
At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA synt...    29   3.8  
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam...    29   3.8  
At1g09350.1 68414.m01046 galactinol synthase, putative contains ...    29   3.8  
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to...    28   6.7  
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to...    28   6.7  
At1g27090.1 68414.m03302 glycine-rich protein                          28   6.7  
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to...    27   8.9  
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to...    27   8.9  

>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -2

Query: 257 LLGMTHG-PVHPAIEDHAQSLLKLLVPLGAGTGAMIPG*LCQSEHVGRSSIATHCHVHFP 81
           L G+THG PVH  +E    +LL +      G+  + P     S   G +S  ++    FP
Sbjct: 781 LSGLTHGSPVHQTVE----ALLNMTFGKVRGSQTLNPVNSGTSSSSGAASEDSNIRPEFP 836

Query: 80  TWDGILTLPWL*NA 39
            WD +  +P++ +A
Sbjct: 837 AWDILKAVPYVVDA 850


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 239 RESSPGVHGAMWGALEMYCPHHCQMWKLVPAHTLNMLHI 355
           RE++P  H +MW A+ ++     Q W  +  H   + H+
Sbjct: 336 RENNPTCHSSMWEAVLLFSKKFPQSWVYLNVHKSVLNHL 374


>At3g10280.1 68416.m01232 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to fatty acid elongase
           3-ketoacyl-CoA synthase 1 GB:AAC99312 [Arabidopsis
           thaliana]
          Length = 459

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 376 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCXQIFD 504
           +HD      V +G + +++    Y   R KP YL+ F C Q  D
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72


>At2g46720.1 68415.m05829 fatty acid elongase 3-ketoacyl-CoA
           synthase, putative similar to GI:4091810; contains Pfam
           profile PF02797: Chalcone and stilbene synthases,
           C-terminal domain
          Length = 466

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 376 YHDADVGAMVTVGTMALTLIMI-YGAARGKPAYLLPFFCXQIFD 504
           +HD      V +G + +++    Y   R KP YL+ F C Q  D
Sbjct: 29  HHDFFSPFPVKIGLLLISIFFYAYSTTRSKPVYLVDFSCHQPTD 72


>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
           protein low similarity to dTDP-D-glucose-4,6-dehydratase
           from Aneurinibacillus thermoaerophilus GI:16357461,
           Sphingomonas sp. GI:1314581; contains Pfam profile
           PF01370: NAD dependent epimerase/dehydratase family;
           putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
          Length = 667

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/81 (27%), Positives = 35/81 (43%)
 Frame = -2

Query: 338 EYGLGRVSTFDSGVGSTSPVRPTLLHELLGMTHGPVHPAIEDHAQSLLKLLVPLGAGTGA 159
           EYG GR+    S V     ++PT +    G+T  P     E H    +++ V   AGT  
Sbjct: 410 EYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVNV---AGTLT 466

Query: 158 MIPG*LCQSEHVGRSSIATHC 96
           +    +C+   +   + AT C
Sbjct: 467 LAD--VCRENDLLMMNFATGC 485


>At1g09350.1 68414.m01046 galactinol synthase, putative contains
           Pfam profile: PF01501 glycosyl transferase family 8
          Length = 334

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 126 CRQKQHSHSLPRSLPNLGWNLNIALVVKCSRVSS 25
           C QK+  H  P++LP    +L+ A V++C++  S
Sbjct: 299 CGQKEDVHRKPKTLPQFFTDLSEADVLQCAKAPS 332


>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 305

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 26  ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 169
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 97  ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 143


>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 26  ELTLEHFTTKAMLRFHPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 169
           EL+  H   +A    +   G ++  +WL   CL++  GT++L  W LF
Sbjct: 157 ELSNPHSHPQARHNNNNNNGHDQTKKWLLG-CLYLVIGTVLLSLWMLF 203


>At1g27090.1 68414.m03302 glycine-rich protein
          Length = 420

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 285 RCTAHTTVKCGNSSQPILSTCFTS 356
           RC  H  +   NS QPI S C TS
Sbjct: 200 RCVEHAKLWLANSEQPIESNCNTS 223


>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 318

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 71  HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 169
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 131 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 162


>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 71  HPKLGSERGSEWLCCFCLHVRTGTIILGSWHLF 169
           H     ++ + WL   CL++  GT++L  W LF
Sbjct: 178 HNNNDQDKANNWLLG-CLYLTIGTVLLSLWMLF 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,341,745
Number of Sequences: 28952
Number of extensions: 360240
Number of successful extensions: 1051
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)