Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060340.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   3.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.4  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   9.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.4  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 452 FTILWNCR 475
           FTILWNC+
Sbjct: 285 FTILWNCQ 292


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 481 DASTIPKDCKAQISP 437
           D S  PK+CK    P
Sbjct: 470 DGSVAPKECKQDFMP 484


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239 GLLFCSPTCVPIFSSTPLNFCRRPSRSTTRT 147
           G + CSP C  +F    L       + TTR+
Sbjct: 222 GCVLCSPGCFSLFRGKALMDKSVMKKYTTRS 252


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239 GLLFCSPTCVPIFSSTPLNFCRRPSRSTTRT 147
           G + CSP C  +F    L       + TTR+
Sbjct: 536 GCVLCSPGCFSLFRGKALMDKSVMKKYTTRS 566


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239 GLLFCSPTCVPIFSSTPLNFCRRPSRSTTRT 147
           G + CSP C  +F    L       + TTR+
Sbjct: 769 GCVLCSPGCFSLFRGKALMDKSVMKKYTTRS 799


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 239 GLLFCSPTCVPIFSSTPLNFCRRPSRSTTRT 147
           G + CSP C  +F    L       + TTR+
Sbjct: 769 GCVLCSPGCFSLFRGKALMDKSVMKKYTTRS 799


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,940
Number of Sequences: 336
Number of extensions: 3873
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)