Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060340.seq
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    28   1.4  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   3.3  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   7.7  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   7.7  

>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 249 TNKRFTILFSNMCANFLKYTIEFLSSSISINNTYGVLEF 133
           ++KRF +LFS +  N  K  I F+SS  S+     +L +
Sbjct: 320 SDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELLNY 358


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 624 DXSKLTNAFARNVHRFAHVCPRM*XHVLF 538
           D SK+T+    NVHRF   C  +   ++F
Sbjct: 47  DTSKITDEEVANVHRFQRACDYLAASLIF 75


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 347 LKAPIKKYSFCCTQSWLWNGSTAAT 421
           +++  KK S   T S LWNGS++AT
Sbjct: 1   MESQSKKSSALKTLSSLWNGSSSAT 25


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 282 IAIFKVKFYTVTNKRFTILFSNMCANFLKYTIEFLSSSISINNTYGV 142
           +  F + F+ V N  F   ++ +  +F+   +  L SSI I + YGV
Sbjct: 40  VTFFLLCFHLVPNALFLFPWTIITTSFVDANVFTLLSSILILSVYGV 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,779
Number of Sequences: 5004
Number of extensions: 61131
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)