Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060340.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)                     31   0.66 
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)           29   4.6  
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.1  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)                   28   8.1  

>SB_15975| Best HMM Match : NHL (HMM E-Value=5e-09)
          Length = 589

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 183 FLSSSISINNTYGVLEFKIILKFSCCNDSTVSDQYDAATSRQMYFLENTCR 31
           F  SS+ +  +  +     ILKF+C   S  S  + A   R  YF+ +T R
Sbjct: 428 FYKSSVCVYGSNSMNMQSAILKFTCYGSSLTSSPFKALYHRGEYFVSDTAR 478


>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
          Length = 690

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +2

Query: 80  YWSDTVESLQQENFRIILNSKTPYVL----LIEMDDDKNSMVYLRKLAHMLENK 229
           YW DTV+SLQ +N +++   +   +       +++++K   VY   L  ML+ K
Sbjct: 389 YWQDTVKSLQLKNKKLLQEKRELLIKNRDEFTKLEEEKQKAVY--DLTAMLDEK 440


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = -2

Query: 548  MFYFAVAVDYTIV*AAR-FIEFRRRVDNSKGL*SADFSRVNEFKWPPL------NHSRAT 390
            + + A   DY+I+  ++ FI+ R   D   G+ S D+S VN+ KW  +      NH+  T
Sbjct: 1812 LVFAAGQYDYSILEISKGFIQLR--FDFGPGVVSIDWSPVNDGKWHHVAVERQGNHATVT 1869

Query: 389  IVYSKKNIS 363
            + Y K   S
Sbjct: 1870 LDYGKHQAS 1878


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 56   ICLEVAASYWSDTVESLQQENFRIILNSKTPYVLLIEMDDDKNSMVYLRKLAHMLENKIV 235
            I LEV  S W D   SLQ E  ++    K     + ++ D +  M+ LR   +  E+ +V
Sbjct: 2596 IHLEVELSDWKDQASSLQSEVAQL---KKDKAAAMHKVIDSEEQMIQLRSRLYKTEDSLV 2652


>SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)
          Length = 604

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 449 ADFSRVNEFKWPPLNHSRATIVYSKK 372
           AD   + E +WPPL+  R    Y KK
Sbjct: 575 ADIQHLTEHRWPPLSFFRQLEEYKKK 600


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,705,615
Number of Sequences: 59808
Number of extensions: 448133
Number of successful extensions: 1175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)