Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060340.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase...    30   1.3  
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase...    30   1.3  
AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying de...    30   1.3  
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de...    30   1.3  
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de...    30   1.3  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    30   1.8  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    30   1.8  
AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical...    30   1.8  
AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z93397-7|CAB07722.2|  483|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z93372-6|CAB07549.2|  483|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical pr...    27   9.4  
L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein ( Caeno...    27   9.4  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
           beta protein.
          Length = 1418

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 ILFAVHNRG-SGMVQRRPLKLVHSGEICALQSFGIVDASPKFNKTRRSHNRVINCDSEIK 545
           I+F +  RG S  +  R + + H  ++  +QSF +V  S +  KT R+    I   S I+
Sbjct: 79  IMFELEQRGASETIAERTIWITHGQDLVNVQSFFLVAESVELAKTCRAGINDILKSSRIR 138

Query: 546 H 548
           H
Sbjct: 139 H 139


>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
           beta homolog EGL-8 protein.
          Length = 1431

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 ILFAVHNRG-SGMVQRRPLKLVHSGEICALQSFGIVDASPKFNKTRRSHNRVINCDSEIK 545
           I+F +  RG S  +  R + + H  ++  +QSF +V  S +  KT R+    I   S I+
Sbjct: 79  IMFELEQRGASETIAERTIWITHGQDLVNVQSFFLVAESVELAKTCRAGINDILKSSRIR 138

Query: 546 H 548
           H
Sbjct: 139 H 139


>AF068714-7|AAT68905.1|  592|Caenorhabditis elegans Egg laying
           defective protein 8,isoform c protein.
          Length = 592

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 ILFAVHNRG-SGMVQRRPLKLVHSGEICALQSFGIVDASPKFNKTRRSHNRVINCDSEIK 545
           I+F +  RG S  +  R + + H  ++  +QSF +V  S +  KT R+    I   S I+
Sbjct: 79  IMFELEQRGASETIAERTIWITHGQDLVNVQSFFLVAESVELAKTCRAGINDILKSSRIR 138

Query: 546 H 548
           H
Sbjct: 139 H 139


>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
           defective protein 8,isoform a protein.
          Length = 1419

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 ILFAVHNRG-SGMVQRRPLKLVHSGEICALQSFGIVDASPKFNKTRRSHNRVINCDSEIK 545
           I+F +  RG S  +  R + + H  ++  +QSF +V  S +  KT R+    I   S I+
Sbjct: 79  IMFELEQRGASETIAERTIWITHGQDLVNVQSFFLVAESVELAKTCRAGINDILKSSRIR 138

Query: 546 H 548
           H
Sbjct: 139 H 139


>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
           defective protein 8,isoform b protein.
          Length = 1431

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 ILFAVHNRG-SGMVQRRPLKLVHSGEICALQSFGIVDASPKFNKTRRSHNRVINCDSEIK 545
           I+F +  RG S  +  R + + H  ++  +QSF +V  S +  KT R+    I   S I+
Sbjct: 79  IMFELEQRGASETIAERTIWITHGQDLVNVQSFFLVAESVELAKTCRAGINDILKSSRIR 138

Query: 546 H 548
           H
Sbjct: 139 H 139


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 242 KGLLFCSPTCVPIFSSTPLNFCRRPSRSTTRTAF*NLKLF*N 117
           +G L C+ T  P+FS + L+FC R S S   T++ +  +F N
Sbjct: 645 RGFLCCNMTN-PLFSDSYLDFCLRNSTSFLATSYNDTPIFDN 685


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 242 KGLLFCSPTCVPIFSSTPLNFCRRPSRSTTRTAF*NLKLF*N 117
           +G L C+ T  P+FS + L+FC R S S   T++ +  +F N
Sbjct: 645 RGFLCCNMTN-PLFSDSYLDFCLRNSTSFLATSYNDTPIFDN 685


>AF047656-12|AAC05111.1|  168|Caenorhabditis elegans Hypothetical
           protein F17E9.2 protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
 Frame = +1

Query: 160 DRDGRRQKFNGVLEKIG---THVGE-QNSKPFVRHGVEFYFKNGNFMFYLYNSLKFYYYC 327
           D DG  + F  +  KI    T+ G+ ++SK FV     F+   G   F++++S+KF  Y 
Sbjct: 83  DGDGPNENFYRIYYKIEHNCTYSGKVKDSKVFV---TIFWNFPGYKGFFVFHSVKFQRYF 139

Query: 328 LKNKFAFESADKEIFFLLYTIVALEWF 408
           L+  + F +  +      Y  + + WF
Sbjct: 140 LQKGYKFINNSRMRCCYFYNEILIYWF 166


>AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical
           protein Y6B3B.3 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 198 KYTIEFLSSSISINNTYGVLEFKIILKFSCCNDSTVSDQYDAAT 67
           K++  F   +  I NT  V+E +  L+F   N STV D  +AAT
Sbjct: 608 KFSKSFGEIANYIANTGKVMEMRSHLEFFVTNGSTVVDTLEAAT 651


>Z77136-1|CAB00880.1|  606|Caenorhabditis elegans Hypothetical
           protein ZC376.1 protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 265 YFKNGNFMFYLYNSLKFYYYCLKNKFAFESADKEIFFLLY 384
           Y+KNG    +L + ++FY   +K   A + A+ ++F   Y
Sbjct: 331 YYKNGTDAQFLSDDMEFYSGAIKVANAHKRANSKVFMYSY 370


>Z93397-7|CAB07722.2|  483|Caenorhabditis elegans Hypothetical
           protein ZC482.5 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 548 MFYFAVAVDYTIV*AARFIEFRRRVDNSKGL 456
           +F FA  V+Y ++  A+ +  R+++ + KGL
Sbjct: 327 VFLFAAMVEYAVINYAQIVYIRKQIHDLKGL 357


>Z93372-6|CAB07549.2|  483|Caenorhabditis elegans Hypothetical
           protein ZC482.5 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 548 MFYFAVAVDYTIV*AARFIEFRRRVDNSKGL 456
           +F FA  V+Y ++  A+ +  R+++ + KGL
Sbjct: 327 VFLFAAMVEYAVINYAQIVYIRKQIHDLKGL 357


>Z92804-5|CAD89722.2|  320|Caenorhabditis elegans Hypothetical
           protein K05D4.8 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 243 KRFTILFSNMCANFLKYTIEFLSSSISINNTYGVLE 136
           +RF I F     N+LK T E L+  ++I   Y VLE
Sbjct: 128 QRFGICFHPRSENYLKITHETLNWIVAIGYAYFVLE 163


>Z83115-4|CAB05557.3|  422|Caenorhabditis elegans Hypothetical
           protein K11D2.3a protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 38  VFSKKYICLEVAASYWSDTVESLQQENFRIILNSKTPYVLLIEMDD 175
           + S  Y C+EV + Y+ D  E   ++NF +I      Y LL EM D
Sbjct: 80  ILSFLYKCVEVFSEYFKDVEEESVRDNFVVI------YELLDEMMD 119


>L26291-1|AAA72418.1|  422|Caenorhabditis elegans protein (
           Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
          Length = 422

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 38  VFSKKYICLEVAASYWSDTVESLQQENFRIILNSKTPYVLLIEMDD 175
           + S  Y C+EV + Y+ D  E   ++NF +I      Y LL EM D
Sbjct: 80  ILSFLYKCVEVFSEYFKDVEEESVRDNFVVI------YELLDEMMD 119


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 35   HVFSKKYICLEVAASYWSDTVES 103
            HVF+KKY C  V+AS  ++T E+
Sbjct: 1531 HVFTKKYQCCSVSASRDNNTDEA 1553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,626
Number of Sequences: 27780
Number of extensions: 348970
Number of successful extensions: 832
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)