Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060340.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12200.1 68416.m01521 protein kinase family protein contains ...    30   1.6  
At2g22520.1 68415.m02671 hypothetical protein  and grail               30   1.6  
At5g61560.1 68418.m07725 protein kinase family protein contains ...    29   3.8  
At2g13440.1 68415.m01483 glucose-inhibited division family A pro...    29   3.8  
At4g12370.1 68417.m01955 hypothetical protein                          27   8.8  

>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 2   GTRSISEVIKRHVFSKKYICLEVAASYWSDTVESLQQENFRIILNSKTPYVLLIE---MD 172
           G  S   V+   +  KKY   ++  +  +D ++    +  +++ + K PY++  E   +D
Sbjct: 28  GKSSSDFVVLHDIEDKKYAMKKICLAKHTDKLKQTALQEMKLLSSLKNPYIVHYEDSWID 87

Query: 173 DDKNSMVY 196
           +D N+ ++
Sbjct: 88  NDNNACIF 95


>At2g22520.1 68415.m02671 hypothetical protein  and grail
          Length = 185

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +1

Query: 217 VGEQNSKPFV-RHGVEFYFKNGNFMFYLYNSLKFYY---YCLKNKFAFE 351
           V E ++ PF+ +HG+ FYF + N + +++  +  +    +C   KF F+
Sbjct: 12  VREVHAVPFLTKHGIGFYFFSRNSVLHVHQKVHLFVLKRFCYPQKFPFK 60


>At5g61560.1 68418.m07725 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 796

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 172 RRQKFNGVLEKIGTHVGEQNSKPFVRH 252
           R Q    V +K+GT++G+QN++P   H
Sbjct: 205 RIQALTTVNQKVGTNIGKQNNEPHHHH 231


>At2g13440.1 68415.m01483 glucose-inhibited division family A
           protein similar to GidA from Pseudomonas syringae
           [GI:10764670]; contains Pfam profile PF01134 Glucose
           inhibited division protein A
          Length = 723

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
 Frame = +2

Query: 32  RHVFSKKYICLEVAASYWSDTVESLQQENFR---IILNSKTPYVLLIEMDDDKNSMVYLR 202
           RH   KK++ LE  +SY    ++ L  ++ R    +L S++ + LL+  D+  + +  L 
Sbjct: 460 RHADGKKHVVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRFDNADSRLTPLG 519

Query: 203 KLAHMLENK 229
           +   +++++
Sbjct: 520 RELGLIDDR 528


>At4g12370.1 68417.m01955 hypothetical protein
          Length = 300

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
 Frame = +1

Query: 298 YNSLKF-YYYCLKNKFAFESADKEIFFLLYT-------IVALEWFNGGHLNSFTLEKSAL 453
           Y S +F Y Y  K K  F +  K +FF ++T       +  LE  N   +NS T++   +
Sbjct: 169 YISDRFSYQYERKKKRIFLAVRKGVFFKIFTCDGEKPIVHKLEDINWEEINSTTIDGLTI 228

Query: 454 YNPLELSTRRLN 489
           +  L  S  RLN
Sbjct: 229 FTGLYSSEVRLN 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,938,186
Number of Sequences: 28952
Number of extensions: 306111
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)