Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060339.seq
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   1.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.2  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    21   7.2  

>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 329 PLSNVETRPSPYSQHASHPSDHS 397
           P +  + RP+P S++A  P+D++
Sbjct: 252 PATKSKPRPAPASRNAPEPADNN 274


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 166 PVRTCRQKQHSHS 128
           P+ TC +KQH  S
Sbjct: 240 PITTCNKKQHLES 252


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +2

Query: 242 SSIADELDRESSPVSSWSNVGRTGDVLPTPL-SNVETRPSPYSQHASH---PSDHSLIYL 409
           SS+ D  + E     S+S+         +P+   VE  P   S +  +   P  ++    
Sbjct: 42  SSLIDLTESEEKSGGSYSSNKNVSRADHSPVFGKVEPVPHTSSFNMGYLVSPYSYANGAA 101

Query: 410 GTMALTLIMIYGAA-RGKPAYLLPFFC 487
           G + +++    G A  G P   LPFFC
Sbjct: 102 GPIPVSMASKMGLAPTGHPGAALPFFC 128


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 471 CCPSSVFRSSTLPHHFDG 524
           C PS   R    PHH+ G
Sbjct: 50  CDPSVGLRQGIPPHHYGG 67


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 446 AARGKPAYLLPFFC 487
           A  G P   LPFFC
Sbjct: 7   APTGHPGAALPFFC 20


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 260 LDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 385
           L +ES+ +    +V R  D+ P P      R  P +    HP
Sbjct: 81  LPKESNAIIHIYDVHRNADIYPDPEKLDPDRFLPENVQKRHP 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,685
Number of Sequences: 336
Number of extensions: 4066
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)