Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060339.seq
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    28   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   4.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.8  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   7.8  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    25   7.8  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 658 DQSRDDDERRGPTPAARSNSSRKGNATGLRNQG 560
           D++  +D   GPT    +  ++K NA G  N+G
Sbjct: 385 DKNSQNDNGHGPTMETNTTENQKDNARGQSNKG 417


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/74 (28%), Positives = 30/74 (40%)
 Frame = +2

Query: 176 PGIMAPVPAPSGTRSFSSDCA*SSIADELDRESSPVSSWSNVGRTGDVLPTPLSNVETRP 355
           PG+ AP+   +  R   +    S  A     +SSP    S+        PT  SN +  P
Sbjct: 447 PGLAAPIGRKNTLRRTPAKS--SEEAKSTTNDSSPPKDSSSTSTQ----PTEQSNAQQAP 500

Query: 356 SPYSQHASHPSDHS 397
           SP  +    PS+ S
Sbjct: 501 SPKEEERPLPSEPS 514


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 242 SSIADELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 385
           +S  +   R  SP+S  S+      VLP   S  + +P  Y+  +++P
Sbjct: 101 NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFSVPDVQPRLYTNSSTNP 148


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +2

Query: 206 SGTRSFSSDCA*SSIADELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 385
           S + S  S  + SS        SS  S+ S+   T     T  S+  +RP+  S H+S  
Sbjct: 344 SSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSL 403

Query: 386 SDH 394
           S H
Sbjct: 404 SSH 406


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +2

Query: 179 GIMAPVPAPSGTRSFSSDCA*SSIADELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPS 358
           G+ +P    S T    S    S +      E+   S+ ++   + D + TPLS+    PS
Sbjct: 512 GLPSPATTDSNTHMLPSQG--SLLPPSSISETKSFSTKASTPLSTDDIATPLSSAPNPPS 569

Query: 359 PYSQHASHPSDHS 397
               +A   S HS
Sbjct: 570 VMPTYARKTSSHS 582


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 248 IADELDRESSPVSS---WSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSDHSLIYLG 412
           +A E++ E  P      +   G+  D LP P  NVE   +  S + + P D S +  G
Sbjct: 129 MASEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARA--SNNGAAPPDLSCVVRG 184


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 614 SPQQLFAERERDGSPQSRHGFDASNTDS 531
           SPQ  F E +R G    RH   A  TDS
Sbjct: 179 SPQVFFYEIDRSGEYHLRHTTVADTTDS 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,443
Number of Sequences: 5004
Number of extensions: 66819
Number of successful extensions: 199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)