Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060339.seq
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    30   1.5  
08_02_1212 - 25325911-25327047                                         28   6.0  
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    28   6.0  
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450...    28   8.0  

>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 667 TAHDQSRDDDERRGPTPAARSNSSRKGNATGLRNQGM 557
           TA D   DDD      PAARS +S  G+A    + G+
Sbjct: 147 TAEDDDDDDDATEPVNPAARSLASYSGHAIASSSSGL 183


>08_02_1212 - 25325911-25327047
          Length = 378

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = -1

Query: 664 AHDQSRDDDERRGPTPA-ARSNSSRKGNATGLRNQGMDLT--QVTQIAQLPSKW*GKVED 494
           A D++R + +   P PA A +  +   + TG   +G  L   Q+  +          VED
Sbjct: 241 AADKTRGNADSSPPAPAIAAAADADAADGTGRGGEGFSLVRRQLEALNAESGMLRRAVED 300

Query: 493 LKTEEGQQISRFPTSGAVD 437
           L+ E G + +   T+GA D
Sbjct: 301 LRAEVGSRRAAVSTAGAPD 319


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 254 DELDRESSPVSSWSNV-GRTGDVLPTPLSNVETRP 355
           D L     P+SS+S + G   D LP+P SNV  RP
Sbjct: 856 DTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRP 890


>09_02_0121 +
           4502628-4502696,4503727-4503829,4504205-4504328,
           4505963-4506306,4506383-4506487,4507907-4508288,
           4509173-4509437,4509936-4510094,4511150-4511201,
           4511266-4511462,4512865-4513350,4513797-4514093
          Length = 860

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 153 VGRSSIATHCHVHFPTWDGILTLPWL*NAQEL--VPEYAPTIFPIGRTPLLVP 1
           VG + +AT      P   GI   P     Q L  +P+Y P  FP  + PL VP
Sbjct: 613 VGSTPLATPTPGAVPNSVGIPQQPLQLFRQHLGVLPQYPPNYFPYSQYPLYVP 665


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,002,761
Number of Sequences: 37544
Number of extensions: 524527
Number of successful extensions: 1754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)